View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_70 (Length: 334)
Name: NF3002_high_70
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 8459001 - 8459324
Alignment:
| Q |
1 |
ctgtcatcaattaacatgatgacactttccgcttcatcaatggttggtcttgcagccgttgcttcgaccggaggtgaagcatcacttgtagcattgaaag |
100 |
Q |
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| T |
8459001 |
ctgtcatcaattaacatgatgacactttctgcttcatcaatggttggtcttgcagcggttgcttcgaccggaggtgaagcatcacttgtagcattgaaag |
8459100 |
T |
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| Q |
101 |
tttcttccacaattctttacatggctgcaactggtttacttctgttcatgaacaaagttcagccgtcgcagcttgcagaagaacaaagaaatgctactag |
200 |
Q |
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| T |
8459101 |
tttcttccacaattctttacatggctgcaactggtttacttctgttcatgaacaaagttcagccatcgcagcttgcagaagaacaaagaaatgctactag |
8459200 |
T |
|
| Q |
201 |
attttttaagcagcttcaaggagaggtaagaacaaagcttgctcttgggaattttagtgaagctgatgtcaatgaagcaatgaagaaagttttggcattg |
300 |
Q |
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| T |
8459201 |
attttttaagcagcttcaaggagaggtaagaacaaagcttgctcttgggaattttagtgaagctgatgtcaatgaagcaatgaagaaagttttggcattg |
8459300 |
T |
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| Q |
301 |
gataaagcttaccctcttcctttg |
324 |
Q |
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| T |
8459301 |
gataaagcttaccctcttcctttg |
8459324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 1617908 - 1617810
Alignment:
| Q |
97 |
aaagtttcttccacaattctttacatggctgcaactggtttacttctgttcatgaacaaagttcagccgtcgcagcttgcagaagaacaaagaaatgct |
195 |
Q |
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| T |
1617908 |
aaagtttcttccacaattctttatatgtctgcaactgctttacttctgttcatgaacaaaatccagccatcccagcttgtagaggaacagggaaatgct |
1617810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 18790886 - 18790820
Alignment:
| Q |
129 |
aactggtttacttctgttcatgaacaaagttcagccgtcgcagcttgcagaagaacaaagaaatgct |
195 |
Q |
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| T |
18790886 |
aactggtttacttctgttcataaacaaaatccagccatcacagcttgtagaggaacagggaaatgct |
18790820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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