View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_78 (Length: 312)
Name: NF3002_high_78
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 38311738 - 38312025
Alignment:
| Q |
7 |
ctgaaatgaacttagtaacatggaatgcaatgataggtggatatgcacatcaaggtgacattgacatggccttgcgtctatttgaggagatgacattggg |
106 |
Q |
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| T |
38311738 |
ctgaaaggaacttagtaacatggaatgcaatgataggtggatatgcacatcaaggtgacattgacatggccttgcgtctatttgaggagatgacattggg |
38311837 |
T |
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| Q |
107 |
tagccgtggtattagaccgagttatgtgacactagtttctatattatcagtatgtagtagggccggggcagtggagagaggcattcagatatttgaatca |
206 |
Q |
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| T |
38311838 |
tagccatggtattagaccgagttatgtgacactaatttctatattatcagtatgtagtagggtcggggcagtggagagaggcattcagatatttgaatca |
38311937 |
T |
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| Q |
207 |
atgagattgaactatggaattgaaccaggtgctgagcattttgcttgtgttgtggacctttttgggagatctggtttggtagaccgtg |
294 |
Q |
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| T |
38311938 |
atgagattgaactatggaattgaaccaggtgctgagcattttgcttgtgttgtggaccttttagggagatctggtttggtagaccgtg |
38312025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 46921589 - 46921868
Alignment:
| Q |
15 |
aacttagtaacatggaatgcaatgataggtggatatgcacatcaaggtgacattgacatggccttgcgtctatttgaggagatgacattgggtagccgtg |
114 |
Q |
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| T |
46921589 |
aacttagtaacatggaatgcaatgataggtggatatgcacatcaaggtgacattgacatggccttgcgtctatttgaggagatgacattgggtagccgtg |
46921688 |
T |
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| Q |
115 |
gtattagaccgagttatgtgacactagtttctatattatcagtatgtagtagggccggggcagtggagagaggcattcagatatttgaatcaatgagatt |
214 |
Q |
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| T |
46921689 |
gtattagaccgagttatgtgacactggtttctatattatcagtatgtagtagggtcggggcagtggagagaggcattcagatatttgaatcaatgagatt |
46921788 |
T |
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| Q |
215 |
gaactatggaattgaaccaggtgctgagcattttgcttgtgttgtggacctttttgggagatctggtttggtagaccgtg |
294 |
Q |
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| T |
46921789 |
gaactatggaattgaaccaggtgctgagcattttgcttgtgttgtggaccttttagggagatctggtttggtagaccgtg |
46921868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 46891171 - 46890955
Alignment:
| Q |
43 |
gtggatatgcacatcaaggtgacattgacatggccttgcgtctatttgaggagatgacattgggtagccgtggtattagaccgagttatgtgacactagt |
142 |
Q |
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| T |
46891171 |
gtggatatgcacatcaaggcaacgtttacatggctctgcgtcaatttgaggagatgacatttggcagccgtggtattagactgagttatgtgacactggt |
46891072 |
T |
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| Q |
143 |
ttctatattatcagtatgtagtagggccggggcagtggagagaggcattcagatatttgaatcaatgagattgaactatggaattgaaccaggtgctgag |
242 |
Q |
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| T |
46891071 |
ttctatattatcagcatgtggtagggccggggtagtgttgagagggatgcaaatatttgaatcaatgagattgaactatgcaattgaaccaggtactggg |
46890972 |
T |
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| Q |
243 |
cattttgcttgtgttgt |
259 |
Q |
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|||| |||||||||||| |
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| T |
46890971 |
cattatgcttgtgttgt |
46890955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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