View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_high_79 (Length: 311)

Name: NF3002_high_79
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_high_79
NF3002_high_79
[»] chr3 (1 HSPs)
chr3 (1-291)||(55208050-55208341)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 55208050 - 55208341
Alignment:
Q  1 cttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgcatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55208050 cttggaaatctaaattcattgaattgattcattcattcatcatagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgca-g 55208148  T
Q  101 tggtttattgtttggtgtttaccgcgttccacacactcctc-ttaaagctcacactacactataaattaggaagaaaatcatatttccatttcag-tact 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  55208149 tggtttattgtttggtgtttaccgcgttccacacactcctctttaaagctcacactacactataaattaggaacaaaatcatatttccatttcagttact 55208248  T
Q  199 cctatttttcttcattcaaaatcatgttctttcaagtcattgccagccacaaacaaacaaaactctctgattcttgctcatgacccgccgtta 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55208249 cctatttttcttcattcaaaatcatgttctttcaagtcattgccagccacaaacaaacaaaactctctgattcttgctcatgacccgccgtta 55208341  T

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