View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_8 (Length: 667)
Name: NF3002_high_8
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 14 - 652
Target Start/End: Complemental strand, 9176237 - 9175598
Alignment:
| Q |
14 |
aggcaaaggtcgagtggagttaaaccatcctgagacaaacaaaagataaattgaattcaaatatcaatgtaaaagaaatggctagtattaatctgctaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9176237 |
aggcaaaggtcgagtggagttaaaccatcctgagacaaacaaaagataaattgaattcaaatatcaatgtaaaagaaatggctagtattaatctgctaga |
9176138 |
T |
|
| Q |
114 |
caacatattttgaacaatcaatcattgtttaagagtatttctaattttataaaccacggacaaaatattatgatatgcctattaaaaatcgacaccgaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9176137 |
caacatattttgaacaatcaatcattgtttaagagtatttctaattttataaaccacggacaaaatattatgatatgcctattaaaaatcaacaccgaat |
9176038 |
T |
|
| Q |
214 |
tgaacaatactctagactccatagagcttttaaacnnnnnnnnnnn-tataaacatcaatcacgactctaaataaaacaaattcaatcaagccttgtcac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9176037 |
tgaacaatactctagactccatagagcttttaaacaaaaaaaatatatataatcatcaatcacgactctaaataaaacaaattcaatcaagccttgtcac |
9175938 |
T |
|
| Q |
313 |
ttctgctaggtaaggactgatgctggctaatcgatgcatcacggtctattaaagatcaatattttaatgaaactattaattttttaatccaagcatggga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9175937 |
ttctgctaggtaaggactgatgctggctaatcgatgcatcacggtctattaaagatcaatattttaatgaaactattaattttttgatccaagcatggga |
9175838 |
T |
|
| Q |
413 |
ctagtgactagattcgtaacagttcaacaaagaagcaagtgattggcaaagtctaatgattcctaaataacaattggaaagtttttcttcaactgatagg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9175837 |
ctagtgactagattcgtaacagttcaacaaagaagcaagtgattggcaaagtctaatgattcctaaataacaatcggaaagtttttcttcaactgatagg |
9175738 |
T |
|
| Q |
513 |
tttttaatgactatggtttttaacaacttttaagacgtccctgtttaaagagagaatctcgagtaagtacctcaatttcttagcctatcatttaaatcag |
612 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9175737 |
tttttaatgactatggtttttaacaacttttaagacgtccctgtttaaagagagaatctcgagtaagtatctcaatttcttagcctatcatttaaatcag |
9175638 |
T |
|
| Q |
613 |
ataactagttcttaaggacgggacaaatcttctaaatact |
652 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
9175637 |
ataaccagttcttaaggacgggacaaatcttctaaatact |
9175598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 652
Target Start/End: Original strand, 8649853 - 8650468
Alignment:
| Q |
14 |
aggcaaaggtcgagtggagttaaaccatcctgagacaaacaaaagataaattgaattcaaatatcaatgtaaaagaaatggctagtattaatctgctaga |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8649853 |
aggcaaaggtcgagtggagttaaaccatcctgagacaaacaaaagataaattgaattcaaatatcaatgtaaaagaaatggccagtattaatctgctaga |
8649952 |
T |
|
| Q |
114 |
caacatattttgaacaatcaatcattgtttaagagtatttctaattttataaaccacggacaaaatattatgatatgcctattaaaaatcgacaccgaat |
213 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||| | |
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| T |
8649953 |
caacatattttgaacaatcaatcattgcttaagagtttctctaattttataaaccacagacaaaatattatgatatgcatattaaaactcgacatcgagt |
8650052 |
T |
|
| Q |
214 |
tgaacaatactctagactccatagagcttttaaacnnnnnnnnnnntataaacatcaatcacgactctaaataaaacaaattcaatcaagccttgtcact |
313 |
Q |
| |
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||||||| ||| ||||| ||| |||||| |||||| ||| ||||||||||| ||| |||||||||||| |||||||||||||||| |
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| T |
8650053 |
tgaacaaaactttagacacca-agagctgttaaacaaaaacactaa-atattcatcaatcacggctc----taaaacaaattctatcaagccttgtcact |
8650146 |
T |
|
| Q |
314 |
tc---tgctaggtaaggactgatgctggctaatcgatgcatcacggtctattaaagatcaatattttaatgaaactattaattttttaatccaagcatgg |
410 |
Q |
| |
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|| || |||| |||||||| | ||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |||| |||||||||||| |
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| T |
8650147 |
tctcatgtaaggtgaggactgaggttggctaatcaatgcatcacggtctatcaaaaatcaatattttaatgaaact-ttaatatttttatccaagcatgg |
8650245 |
T |
|
| Q |
411 |
gactagtgactagattcgtaacagttcaacaaagaagcaagtgattggcaaagtctaatgattcctaaataacaattggaaagtttttct---tcaactg |
507 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||| |||||| |
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| T |
8650246 |
-------gactagatatgtaatagttcaacaaagaagcaagtgattggaaaagtctaatgattcctaaataac-agtagaaagtttttctacaacaactg |
8650337 |
T |
|
| Q |
508 |
ataggtttttaatgactatggtttttaacaacttttaagacgtccctgtttaaagagagaatctcgagtaagtacctcaatttcttagcctatcatttaa |
607 |
Q |
| |
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||||||||||||||||| || ||||| |||||| |||| | | ||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
8650338 |
ataggtttttaatgacttagg--------------aaagacttccctggttaatgggcaaatctcgtgtaagtatctcaatttcttagccattcatttaa |
8650423 |
T |
|
| Q |
608 |
atcagataactagttcttaaggacgggacaaatcttctaaatact |
652 |
Q |
| |
|
|||| ||||| ||||||||||| | || ||||||||||||||| |
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|
| T |
8650424 |
atcacctaactggttcttaaggaagaaacgaatcttctaaatact |
8650468 |
T |
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