View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_85 (Length: 281)
Name: NF3002_high_85
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_85 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 34688242 - 34688487
Alignment:
| Q |
1 |
aagaaaaagttgagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacctcactacctcctttgcaaac |
100 |
Q |
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| T |
34688242 |
aagaaaaagttgagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacctcactacctcctttgcaaac |
34688341 |
T |
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| Q |
101 |
tctgcctcaagaaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgctcttgtcacctgtttgtctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688342 |
tctgcctcaagaaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgctcttgtcacctgtttgtctcc |
34688441 |
T |
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| Q |
201 |
aaaatctttcatatactgtcggatccccactgcatatacatttaat |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34688442 |
aaaatctttcatatactgtcggatccccactgcatatacatataat |
34688487 |
T |
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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 43614430 - 43614605
Alignment:
| Q |
11 |
tgagaggaacctgtccctacaacaatgtgacgtccttctgtgactgcattcccgaccactctgtgcaacctcactacctcctttgcaaactctgcctcaa |
110 |
Q |
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||||| |||||||| || ||||||| ||| || |||| ||| |||||||| || ||||| | || ||||||||||| ||||||| ||| |||| ||||| |
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| T |
43614430 |
tgagatgaacctgttccaacaacaacgtgtcgaccttgtgttactgcatttccaaccacattatgtaacctcactacttcctttgaaaattctggctcaa |
43614529 |
T |
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| Q |
111 |
gaaaccaacatatgttcgacacatccgaaaaatagctcatggattgccatcctggtattatgatcgtgctcttgtc |
186 |
Q |
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|||||||||| ||| | | ||| |||||||| ||||| |||||||||||||||||||| || ||| ||||||| |
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| T |
43614530 |
gaaaccaacaaatgcttgttggatcagaaaaataactcatagattgccatcctggtattattattgtggtcttgtc |
43614605 |
T |
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