View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_89 (Length: 271)
Name: NF3002_high_89
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_89 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 45516896 - 45517045
Alignment:
| Q |
90 |
catgatttcaataaccatcaacaacatattcaataatctgggcatctcagtttcccatccacctttccttcc-tttttcatcagtgacgaatccacgtag |
188 |
Q |
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| T |
45516896 |
catgatttcaataactatcaacaacatattcaataatctgggcatctcagtttcccctccacctttccttccttttttcatcagtgacaaattgatgtag |
45516995 |
T |
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| Q |
189 |
ttagatctggtcgaagaaggtgaccgtagtaaagatggtgacggcggcggc |
239 |
Q |
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| T |
45516996 |
ttagatctggttgaagaaggtgacc-tggtaaagattgtgacggcggcggc |
45517045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 43641961 - 43641905
Alignment:
| Q |
107 |
tcaacaacatattcaataatctgggcatctcagtttcccatccacctttccttcctt |
163 |
Q |
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| T |
43641961 |
tcaacaacatattcaataatctgggcatctcagtttcccatccacctttccttcctt |
43641905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43642057 - 43642013
Alignment:
| Q |
1 |
catcctcgtcatcaatcaagcttctcccaaagctctacaacacca |
45 |
Q |
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| T |
43642057 |
catccttgtcatcaatcaagcttctcccaaagttctacaacacca |
43642013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 38550575 - 38550501
Alignment:
| Q |
162 |
tttttcatcagtgacgaatccacgtagttagatctggtcgaagaaggtgaccgtagtaaagatggtgacggcggc |
236 |
Q |
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| T |
38550575 |
tttttcatcaacgacaaatcaatgtagttatatctggttgaagaaggtgacagttgtaaagattgtgacggcggc |
38550501 |
T |
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