View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_high_9 (Length: 661)
Name: NF3002_high_9
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Original strand, 45282916 - 45283540
Alignment:
| Q |
19 |
cctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45282916 |
cctggatggttttaaattggccgctaccatccttggcaacaacagcattaggcataatatttgctctccaattttttcgttgcattttagccaaaagctt |
45283015 |
T |
|
| Q |
119 |
gcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283016 |
gcgatcagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag |
45283115 |
T |
|
| Q |
219 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283116 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct |
45283215 |
T |
|
| Q |
319 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
45283216 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttg |
45283315 |
T |
|
| Q |
419 |
gtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283316 |
gtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
45283415 |
T |
|
| Q |
519 |
atcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgcta |
618 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283416 |
atcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgcta |
45283515 |
T |
|
| Q |
619 |
tgtatgccttcgggtcagcggcatc |
643 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45283516 |
tgtatgccttcgggtcagcggcatc |
45283540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Original strand, 45271142 - 45271766
Alignment:
| Q |
19 |
cctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271142 |
cctggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagctt |
45271241 |
T |
|
| Q |
119 |
gcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
45271242 |
gcgaccagaagaagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaag |
45271341 |
T |
|
| Q |
219 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45271342 |
ttgaattgctggaggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctcct |
45271441 |
T |
|
| Q |
319 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
45271442 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttg |
45271541 |
T |
|
| Q |
419 |
gtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
518 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
45271542 |
gtcatgaacagcttcaatgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagcc |
45271641 |
T |
|
| Q |
519 |
atcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgcta |
618 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
45271642 |
atcttggcaccatttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgcta |
45271741 |
T |
|
| Q |
619 |
tgtatgccttcgggtcagcggcatc |
643 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
45271742 |
tgtatgccttagggtcagcggcatc |
45271766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 640
Target Start/End: Original strand, 45294304 - 45294925
Alignment:
| Q |
19 |
cctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagctt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |||| |||||||||| |||| || |||||||||||||||||| |
|
|
| T |
45294304 |
cctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagctt |
45294403 |
T |
|
| Q |
119 |
gcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag |
218 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45294404 |
gcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaag |
45294503 |
T |
|
| Q |
219 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
45294504 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctcct |
45294603 |
T |
|
| Q |
319 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttg |
418 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
45294604 |
tgatcttcttctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttg |
45294703 |
T |
|
| Q |
419 |
gtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
518 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294704 |
gtcatgaacagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
45294803 |
T |
|
| Q |
519 |
atcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgcta |
618 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||| |
|
|
| T |
45294804 |
atcttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgcta |
45294903 |
T |
|
| Q |
619 |
tgtatgccttcgggtcagcggc |
640 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
45294904 |
tgtatgccttagggtcagcggc |
45294925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 640
Target Start/End: Original strand, 45303264 - 45303885
Alignment:
| Q |
19 |
cctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagctt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |||| |||||||||| |||| || |||||||||||||||||| |
|
|
| T |
45303264 |
cctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagctt |
45303363 |
T |
|
| Q |
119 |
gcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag |
218 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45303364 |
gcgatcagaagcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaag |
45303463 |
T |
|
| Q |
219 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
45303464 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctcct |
45303563 |
T |
|
| Q |
319 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttg |
418 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
45303564 |
tgatcttcttctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttg |
45303663 |
T |
|
| Q |
419 |
gtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
518 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303664 |
gtcatgaacagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
45303763 |
T |
|
| Q |
519 |
atcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgcta |
618 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||| |
|
|
| T |
45303764 |
atcttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgcta |
45303863 |
T |
|
| Q |
619 |
tgtatgccttcgggtcagcggc |
640 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
45303864 |
tgtatgccttagggtcagcggc |
45303885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Original strand, 45274675 - 45275299
Alignment:
| Q |
19 |
cctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45274675 |
cctggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagctt |
45274774 |
T |
|
| Q |
119 |
gcgaccagaagaagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaag |
218 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
45274775 |
gcgatcagaagcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaag |
45274874 |
T |
|
| Q |
219 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctcct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45274875 |
ttgaattgctggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctt |
45274974 |
T |
|
| Q |
319 |
tgatcttcttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttg |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
45274975 |
tgattttcttctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttg |
45275074 |
T |
|
| Q |
419 |
gtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagcc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45275075 |
gtcatgaacagcttgaatgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagcc |
45275174 |
T |
|
| Q |
519 |
atcttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgcta |
618 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
45275175 |
atcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgcta |
45275274 |
T |
|
| Q |
619 |
tgtatgccttcgggtcagcggcatc |
643 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
45275275 |
tgtatgccttagggtcagcggcatc |
45275299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 442
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
348 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
442 |
Q |
| |
|
|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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