View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_92 (Length: 266)
Name: NF3002_high_92
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_92 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 37108267 - 37108521
Alignment:
| Q |
3 |
tttggtccatcattgccagcagagcaaacaacaacaatacctttcttagcagcatggaaagatccaatagcaacactatcattgaaaaggttagaagcag |
102 |
Q |
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| T |
37108267 |
tttggtccactattgccagcagagcaaacaacaacaatacctttcttagcagcatggaaagatccaatagcaacactatcattgaaaaggttagaagcag |
37108366 |
T |
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| Q |
103 |
agccaccaagtgacacagacaagacatcaacaccatcatggatagctgcatcaaatgctgcaagtatgtctgcatcaaagcactcgtcgccattaattgg |
202 |
Q |
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| T |
37108367 |
agccaccaagtgacacagacaagacatcaacaccatcatggatagctgcatcaaatgctgcaagtatgtctgcatcaaagcactcgtcgccattaattgg |
37108466 |
T |
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| Q |
203 |
aggccaacaaactttgtatgatgcaactcttgcttttggtgaaccaccctttgct |
257 |
Q |
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| T |
37108467 |
aggccaacaaactttgtatgatgcaactcttgcttttggtgaaccaccctttgct |
37108521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 39188879 - 39188767
Alignment:
| Q |
126 |
acatcaacaccatcatggatagctgcatcaaatgctgcaagtatgtctgcatcaaagcactcgtcgccattaattggaggccaacaaactttgtatgatg |
225 |
Q |
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|||||||| |||||||| ||||| |||||| ||||| | || || ||||||||||| ||| ||||| |||||| ||||| || |||||||| | | |
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| T |
39188879 |
acatcaaccccatcatgaatagccatatcaaaggctgccatgatatcagcatcaaagcattcgctgccatcaattggtggccagcagactttgtaagcag |
39188780 |
T |
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| Q |
226 |
caactcttgcttt |
238 |
Q |
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| T |
39188779 |
caactcttgcttt |
39188767 |
T |
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