View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_100 (Length: 264)
Name: NF3002_low_100
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 5111176 - 5110923
Alignment:
| Q |
1 |
agaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgc |
100 |
Q |
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| T |
5111176 |
agaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtccatgttattaagatccaatgc |
5111077 |
T |
|
| Q |
101 |
atttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtga |
200 |
Q |
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| T |
5111076 |
attcactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaattactaagaatatca |
5110977 |
T |
|
| Q |
201 |
taagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
254 |
Q |
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| T |
5110976 |
taagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
5110923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 5094172 - 5093924
Alignment:
| Q |
2 |
gaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgca |
101 |
Q |
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| T |
5094172 |
gaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctactaagattcaatgca |
5094073 |
T |
|
| Q |
102 |
tttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtgat |
201 |
Q |
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| T |
5094072 |
tttactcttccatggtgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagaggaaattgaccaattactaagaatatcat |
5093973 |
T |
|
| Q |
202 |
aagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatc |
250 |
Q |
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| T |
5093972 |
aagggtctaaggttattgaggatttgaatgcaagaagtgaaaattcatc |
5093924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 5083896 - 5084148
Alignment:
| Q |
2 |
gaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgca |
101 |
Q |
| |
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||||||||| ||||||| |||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5083896 |
gaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaaggtccatgttactaagattcaatgca |
5083995 |
T |
|
| Q |
102 |
tttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtgat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||| |
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| T |
5083996 |
tttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaatttctaagcatatgat |
5084095 |
T |
|
| Q |
202 |
aagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
254 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5084096 |
aaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatctgtg |
5084148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 14427678 - 14427926
Alignment:
| Q |
2 |
gaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaaggtccatgttattaagattcaatgca |
101 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
14427678 |
gaaactattgccatgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgca |
14427777 |
T |
|
| Q |
102 |
tttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagatgaaattgaccaattactaagaatgtgat |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
14427778 |
tttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagcagaagtggaaattgaccaattactaagaatatgat |
14427877 |
T |
|
| Q |
202 |
aagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatc |
250 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14427878 |
aaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatc |
14427926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 67 - 251
Target Start/End: Complemental strand, 16872553 - 16872369
Alignment:
| Q |
67 |
taccttcaaggtccatgttattaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagt |
166 |
Q |
| |
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|||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| || | ||||||| |
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| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaacccaattacatgatgaga---aagaagt |
16872457 |
T |
|
| Q |
167 |
agaagatgaaattgacca---attactaagaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatct |
251 |
Q |
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|||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
16872456 |
agaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaattcatct |
16872369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 16873432 - 16873359
Alignment:
| Q |
2 |
gaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaa |
75 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
16873432 |
gaaactattgccttgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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