View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_101 (Length: 259)
Name: NF3002_low_101
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 1615352 - 1615574
Alignment:
| Q |
16 |
atgatcaaaaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcgtcaaagcatcactcttcatcatc |
115 |
Q |
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| T |
1615352 |
atgatcaaaaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcatcaaagcatcactcttcatcatc |
1615451 |
T |
|
| Q |
116 |
ttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataagattgcaacctgcaactacagtgactgtgacatc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1615452 |
ttcagcgtatgaattcaaacctagccacaccaccatccataaaataagggggaaaaaataacataagattgcaacctgcaaccacagtgactgtgacatc |
1615551 |
T |
|
| Q |
216 |
aagtaagattttttcccatcaaaca |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
1615552 |
--gtaagattttttcccatcaaaca |
1615574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 24455331 - 24455147
Alignment:
| Q |
22 |
aaaaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagc |
121 |
Q |
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| T |
24455331 |
aaaaacgaaatcataacaacaaaaagaaatatgtggagggaaaagaaacctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagc |
24455232 |
T |
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| Q |
122 |
gtatgaa-ttcaaacctagccacaccaccatccatacaataagg--gggaaaaaataacataagattgcaacctgcaactacagt |
203 |
Q |
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| T |
24455231 |
gtatgaatttcaaatctagccacaccaccatccataaaatacggaagaaaaaaaaaaacataagattgcaacctgcaaccacagt |
24455147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 43227489 - 43227403
Alignment:
| Q |
93 |
tcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataa |
181 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
43227489 |
tcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataa--ggaaaaaaataacataa |
43227403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
| Q |
82 |
tcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataag |
163 |
Q |
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| T |
48909245 |
tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag |
48909326 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
| Q |
86 |
cttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatcc |
153 |
Q |
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|||||| |||||| ||||||||||||||||||| | |||||| ||||| |||||||||||||||| |
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| T |
35361052 |
cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc |
35361119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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