View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_102 (Length: 255)
Name: NF3002_low_102
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_102 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2715 - 2625
Alignment:
| Q |
1 |
taaatgtgcttaatcaaactgtttatccaaacattacctaaatctaaaacaaaatcaacttaacaacatgacttcagtcaaactgagatat |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2715 |
taaatgtgcttaatcaaactgtttatccaaacattacctaaatctaaaacaaaatcaacttaacaacatgacttcagtcaaactgagatat |
2625 |
T |
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Target: scaffold0147; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 2545 - 2477
Alignment:
| Q |
171 |
attgaataaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataat |
239 |
Q |
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| T |
2545 |
attgattaaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataat |
2477 |
T |
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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3451934 - 3451844
Alignment:
| Q |
1 |
taaatgtgcttaatcaaactgtttatccaaacattacctaaatctaaaacaaaatcaacttaacaacatgacttcagtcaaactgagatat |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451934 |
taaatgtgcttaatcaaactgtttatccaaacattacctaaatctaaaacaaaatcaacttaacaacatgacttcagtcaaactgagatat |
3451844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 3451764 - 3451696
Alignment:
| Q |
171 |
attgaataaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataat |
239 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451764 |
attgattaaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataat |
3451696 |
T |
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