View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_103 (Length: 254)
Name: NF3002_low_103
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_103 |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 5110771 - 5110943
Alignment:
| Q |
82 |
tataaatatcctccttggtgcttagactctcatgcatgcatcctattgaaaatggccaagttatactcttttcactctttgctctttattctctctgcct |
181 |
Q |
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| T |
5110771 |
tataaatatcctccttggtgcttagacactcatgcatgcatcctattgaaaatggccaagttatactcttttcactctttgctctttattctctctgcct |
5110870 |
T |
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| Q |
182 |
cactctattattacctcttcacttgcttagctatgagttctaaaaccatcaccacagatgaatttgcacttct |
254 |
Q |
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| T |
5110871 |
cactctattattacctcttcacttgcttagctatgatttctaaaaccatcaccacagatgaatttgcacttct |
5110943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 5084260 - 5084128
Alignment:
| Q |
125 |
tattgaaaatggccaagttatactcttttcactctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttct-- |
222 |
Q |
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| T |
5084260 |
tattgaaaatggccaagttatactcttttcactcttgcctctgtattctctctacttcactctattattatttcttcacttgcttagctataagtagtaa |
5084161 |
T |
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| Q |
223 |
-aaaaccatcaccacagatgaatttgcacttct |
254 |
Q |
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| T |
5084160 |
aaaaaacatcaccacagatgaattttcacttct |
5084128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 206
Target Start/End: Original strand, 5093770 - 5093891
Alignment:
| Q |
81 |
gtataaatatcctccttggtgcttagactctcatgcatgcatcctattgaaaatggccaagttatactcttttcactctttgctctttattctctctgcc |
180 |
Q |
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| T |
5093770 |
gtataagtaaccacctcggtgcttagactctcatgcat----cgtattgaaaatgcctaagttatactcttttcactcttggctctgtattctctctgct |
5093865 |
T |
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| Q |
181 |
tcactctattattacctcttcacttg |
206 |
Q |
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| T |
5093866 |
tcactctattattacttcttcacttg |
5093891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 14428012 - 14427948
Alignment:
| Q |
155 |
actctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagt |
219 |
Q |
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| T |
14428012 |
actcttggctctttattctttctgcctcaatttattattacttcttcacttgcttagctgtgagt |
14427948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 16872299 - 16872386
Alignment:
| Q |
170 |
ttctctctgcctcactctattattacctcttcacttgcttagctatgagttct---aaaaccatcaccacagatgaatttgcacttct |
254 |
Q |
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|||||| || |||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| |||||||||| ||||||| |
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| T |
16872299 |
ttctctatgtctcactgcattattacttcttcacttgcttagctatgagtactaacaaaaacatcaccatagatgaattttcacttct |
16872386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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