View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_105 (Length: 253)
Name: NF3002_low_105
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_105 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 31377253 - 31376999
Alignment:
| Q |
1 |
catagactattttcgcataataataatttcaaggaataaattgaaaacaccctacaatttcaagggacaaattgatgatttgcgtttacatttattaaga |
100 |
Q |
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| T |
31377253 |
catacactattttcgcataataataatttcaagaaataaattgacaagaccctacaatttcaagggccaaattggtgatttgcgtttacatttattaatg |
31377154 |
T |
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| Q |
101 |
acttccttagtctcttaaattccaaatgcatgctatatatattgagact--agatatctacctctaaattatcgatatatctgaactctctcttttcctt |
198 |
Q |
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| T |
31377153 |
acttccttagcctcttaaattccaaatgcatgctatatatattgagactagagatctctacccctaaattattgatatatctgaactctctcttttcctt |
31377054 |
T |
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| Q |
199 |
gataactttaagatgaatacttcctctcattttttcttcctttcactcattctca |
253 |
Q |
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| T |
31377053 |
gatagttttaagatgaatacttcctctcattttttcttcctttccctcattctca |
31376999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 31416122 - 31416165
Alignment:
| Q |
206 |
ttaagatgaatacttcctctcattttttcttcctttcactcatt |
249 |
Q |
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| T |
31416122 |
ttaagatgaacacttcctctcaatttctcttcctttcactcatt |
31416165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 31284562 - 31284494
Alignment:
| Q |
15 |
gcataataataatttcaaggaataaattga--aaacaccctacaatttcaagggac-aaattgatgattt |
81 |
Q |
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| T |
31284562 |
gcataataataattgtaaggaataaattgaataaaaaccctacaatttc-agggactaaattgatgattt |
31284494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 31283970 - 31283913
Alignment:
| Q |
192 |
tttccttgataactttaagatgaatacttcctctcattttttcttcctttcactcatt |
249 |
Q |
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| T |
31283970 |
tttccttgttaatattaagatgaacacttcatctcaatttctcttcctttcactcatt |
31283913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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