View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_106 (Length: 253)
Name: NF3002_low_106
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_106 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 25157797 - 25157555
Alignment:
| Q |
2 |
aatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaa-------acactaattgaagagttggtatctattatgataac |
94 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
25157797 |
aatttcaaaaacaacattacatttcactatgatctcgctctcaacatcatgatccgaattccgaaaccctaatcgaagagttggtatctattatgataac |
25157698 |
T |
|
| Q |
95 |
atcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattctttcaacgtcataaaaacacgagtttcttgagcccaactt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25157697 |
atcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattttttcaacgtcataaaaacacgagtttcttgaacccaactt |
25157598 |
T |
|
| Q |
195 |
ttagcggtcaacaattgattcctttaagttctaaccagatttt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25157597 |
ttagcggtcaacaattgattcctttaagttctaaccagatttt |
25157555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25165991 - 25165840
Alignment:
| Q |
1 |
caatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatctattatgataacatcgaa |
100 |
Q |
| |
|
|||||||| |||||||| |||||| |||| |||| ||||||||||||| |||||||||| |||| ||| ||||||||||| || |||||||||||| |
|
|
| T |
25165991 |
caatttcacaaacaacaacacacttaactacaatcttgctctcaatatcacgatccgaaaccctaacagaatagttggtatctgctacgataacatcgaa |
25165892 |
T |
|
| Q |
101 |
acccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacat |
152 |
Q |
| |
|
|| ||| ||||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
25165891 |
acagttgccttttacaaagatgttaggtttgcttctcaaatcctaggaacat |
25165840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 25164585 - 25164520
Alignment:
| Q |
64 |
taattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
25164585 |
taattgaagagttggtatctattatgataacatcgaaacacttgtgttttataaggatgttaggtt |
25164520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 25170188 - 25170023
Alignment:
| Q |
20 |
acacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaag |
119 |
Q |
| |
|
||||||||||| ||||||||||| || ||| | | || ||| ||||| ||||||||||||| || ||||| | ||| ||||| | | ||||||||| | |
|
|
| T |
25170188 |
acacttcactacgatctcgctcttaacgtcacggttcgtaaccctaatcgaagagttggtatttactatgacaccattgaaacgatggcgttttataagg |
25170089 |
T |
|
| Q |
120 |
atgttaggtttggttctcaaaccctaggaacattctttcaacgtcataaaaacacgagtttcttga |
185 |
Q |
| |
|
||||| ||||| |||||||||||| | ||||||||| | |||||| || |||||||| |||| |
|
|
| T |
25170088 |
atgttcagtttgcgaatcaaaccctagggagattctttcagcatcataagaatacgagttttttga |
25170023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 49494074 - 49494241
Alignment:
| Q |
1 |
caatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatctattatgataacatcgaa |
100 |
Q |
| |
|
|||||||| ||| |||| |||||||| |||||||| | ||||| ||| ||| ||||| ||||| |||||||| || ||||||| || |||||||| |
|
|
| T |
49494074 |
caatttcacaaataacaacacacttcattatgatctttccgtcaatctcacaatcagaaaccctaatagaagagttagtgtctattacaatgacatcgaa |
49494173 |
T |
|
| Q |
101 |
acccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattctttcaacgtcataa |
168 |
Q |
| |
|
|| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
49494174 |
acactttcattttataaagattttaggtttggttctcaaaccctaggaaaattctttcaacctcataa |
49494241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 37731319 - 37731359
Alignment:
| Q |
121 |
tgttaggtttggttctcaaaccctaggaacattctttcaac |
161 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
37731319 |
tgttaggtttggttctcaatccctgggaaaattctttcaac |
37731359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University