View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_107 (Length: 252)

Name: NF3002_low_107
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_107
NF3002_low_107
[»] chr1 (24 HSPs)
chr1 (7-115)||(4088667-4088775)
chr1 (121-236)||(18422647-18422762)
chr1 (121-233)||(19899837-19899949)
chr1 (161-236)||(28564846-28564921)
chr1 (115-233)||(32267024-32267142)
chr1 (131-236)||(37451292-37451397)
chr1 (160-236)||(51128894-51128970)
chr1 (114-234)||(23999336-23999456)
chr1 (123-236)||(15752027-15752140)
chr1 (159-233)||(10922761-10922835)
chr1 (121-236)||(15382929-15383044)
chr1 (121-236)||(30254420-30254534)
chr1 (121-235)||(1547283-1547397)
chr1 (159-236)||(32216089-32216166)
chr1 (160-236)||(3534967-3535043)
chr1 (121-235)||(37618960-37619076)
chr1 (121-201)||(8222127-8222207)
chr1 (160-235)||(27563971-27564046)
chr1 (121-236)||(10182073-10182188)
chr1 (160-230)||(27763382-27763451)
chr1 (159-236)||(238578-238654)
chr1 (207-236)||(7079128-7079157)
chr1 (119-233)||(42721033-42721147)
chr1 (160-236)||(48620672-48620748)
[»] chr5 (25 HSPs)
chr5 (122-236)||(31705671-31705785)
chr5 (121-236)||(35826543-35826658)
chr5 (159-236)||(24886142-24886219)
chr5 (160-232)||(17158094-17158166)
chr5 (121-237)||(38528295-38528411)
chr5 (161-236)||(14919588-14919663)
chr5 (159-237)||(27330344-27330420)
chr5 (121-236)||(5112373-5112488)
chr5 (121-236)||(36860423-36860538)
chr5 (159-236)||(7208923-7209000)
chr5 (122-236)||(32563150-32563264)
chr5 (120-201)||(26317779-26317860)
chr5 (159-231)||(27318552-27318624)
chr5 (121-233)||(22974145-22974257)
chr5 (120-236)||(5829896-5830016)
chr5 (121-236)||(19119859-19119974)
chr5 (120-185)||(7693229-7693294)
chr5 (121-237)||(8741945-8742062)
chr5 (161-236)||(699190-699265)
chr5 (121-237)||(1429204-1429320)
chr5 (118-190)||(14409432-14409504)
chr5 (133-235)||(22255193-22255296)
chr5 (121-187)||(12910350-12910416)
chr5 (207-236)||(21088826-21088855)
chr5 (161-201)||(22255615-22255655)
[»] chr7 (22 HSPs)
chr7 (120-236)||(37109846-37109962)
chr7 (121-236)||(17842657-17842772)
chr7 (120-236)||(27283718-27283834)
chr7 (122-233)||(38258521-38258632)
chr7 (122-234)||(24211717-24211829)
chr7 (120-236)||(37346996-37347112)
chr7 (121-236)||(32821124-32821239)
chr7 (115-236)||(31520794-31520915)
chr7 (159-235)||(38053499-38053575)
chr7 (161-235)||(7334809-7334883)
chr7 (159-236)||(27421450-27421527)
chr7 (121-233)||(18797304-18797414)
chr7 (161-236)||(30055542-30055617)
chr7 (121-237)||(31579134-31579255)
chr7 (119-237)||(5657551-5657669)
chr7 (205-237)||(32432511-32432543)
chr7 (117-235)||(11071176-11071295)
chr7 (121-236)||(21991611-21991726)
chr7 (121-236)||(26524398-26524513)
chr7 (207-236)||(29173601-29173630)
chr7 (159-231)||(12390706-12390778)
chr7 (161-237)||(44413449-44413525)
[»] chr3 (20 HSPs)
chr3 (118-235)||(20373367-20373484)
chr3 (121-235)||(48354932-48355046)
chr3 (121-236)||(3655272-3655387)
chr3 (121-236)||(40552329-40552444)
chr3 (159-236)||(4761719-4761796)
chr3 (121-231)||(47481513-47481623)
chr3 (120-236)||(37203057-37203173)
chr3 (121-236)||(26941330-26941445)
chr3 (115-236)||(35844311-35844432)
chr3 (123-236)||(46297832-46297945)
chr3 (120-236)||(51213051-51213167)
chr3 (159-236)||(40936020-40936097)
chr3 (159-236)||(29099384-29099461)
chr3 (167-236)||(42506145-42506214)
chr3 (161-234)||(54505839-54505912)
chr3 (160-234)||(21009874-21009948)
chr3 (160-236)||(7327552-7327629)
chr3 (207-236)||(34133012-34133041)
chr3 (160-236)||(24489032-24489108)
chr3 (159-236)||(45174532-45174611)
[»] chr8 (18 HSPs)
chr8 (121-233)||(43643674-43643786)
chr8 (120-233)||(10555281-10555394)
chr8 (121-236)||(1204926-1205041)
chr8 (121-236)||(1150181-1150296)
chr8 (159-236)||(23854507-23854584)
chr8 (121-234)||(30654661-30654774)
chr8 (159-234)||(8803888-8803963)
chr8 (159-234)||(37970597-37970672)
chr8 (115-236)||(6098594-6098715)
chr8 (120-236)||(13307621-13307737)
chr8 (121-236)||(36695042-36695157)
chr8 (161-236)||(12876148-12876223)
chr8 (120-186)||(15009240-15009306)
chr8 (204-235)||(34463670-34463701)
chr8 (207-236)||(9864233-9864262)
chr8 (159-236)||(31933962-31934039)
chr8 (123-236)||(465843-465956)
chr8 (208-236)||(16222949-16222977)
[»] chr4 (25 HSPs)
chr4 (121-233)||(25184113-25184225)
chr4 (121-236)||(55477987-55478106)
chr4 (118-237)||(39397915-39398034)
chr4 (159-231)||(879649-879721)
chr4 (121-234)||(32912678-32912791)
chr4 (121-234)||(34361589-34361702)
chr4 (121-233)||(50697242-50697354)
chr4 (108-236)||(37663837-37663963)
chr4 (115-236)||(25701153-25701274)
chr4 (123-231)||(27396618-27396726)
chr4 (121-236)||(3042611-3042726)
chr4 (121-236)||(19089549-19089664)
chr4 (159-236)||(19440744-19440821)
chr4 (118-236)||(36493784-36493902)
chr4 (116-237)||(30002719-30002840)
chr4 (120-201)||(53124286-53124367)
chr4 (121-201)||(4396326-4396406)
chr4 (159-237)||(29584295-29584371)
chr4 (121-231)||(35021136-35021246)
chr4 (121-234)||(42199729-42199842)
chr4 (117-193)||(46884173-46884249)
chr4 (163-236)||(23761114-23761187)
chr4 (122-232)||(37775670-37775780)
chr4 (161-233)||(17167753-17167825)
chr4 (161-233)||(17173330-17173402)
[»] chr2 (16 HSPs)
chr2 (120-236)||(37905708-37905823)
chr2 (159-236)||(43648333-43648410)
chr2 (161-231)||(19289416-19289486)
chr2 (119-234)||(35958907-35959022)
chr2 (160-237)||(33551073-33551150)
chr2 (121-234)||(11366471-11366584)
chr2 (118-236)||(4478365-4478484)
chr2 (159-236)||(33709320-33709397)
chr2 (121-230)||(17054190-17054299)
chr2 (121-232)||(17071829-17071940)
chr2 (159-236)||(27350026-27350103)
chr2 (160-236)||(2325458-2325534)
chr2 (119-236)||(19313850-19313967)
chr2 (123-236)||(36641988-36642101)
chr2 (161-236)||(3176979-3177054)
chr2 (207-236)||(39167451-39167480)
[»] scaffold0291 (1 HSPs)
scaffold0291 (123-236)||(7889-8002)
[»] chr6 (7 HSPs)
chr6 (121-234)||(7055286-7055399)
chr6 (159-234)||(1945872-1945947)
chr6 (121-234)||(5627391-5627504)
chr6 (121-233)||(4318895-4319007)
chr6 (121-236)||(8513233-8513348)
chr6 (121-151)||(26301941-26301971)
chr6 (175-235)||(6091253-6091313)
[»] scaffold0022 (1 HSPs)
scaffold0022 (123-234)||(146088-146199)
[»] scaffold0002 (2 HSPs)
scaffold0002 (121-236)||(134-249)
scaffold0002 (175-236)||(408498-408559)
[»] scaffold0061 (1 HSPs)
scaffold0061 (159-236)||(43995-44072)
[»] scaffold0017 (1 HSPs)
scaffold0017 (159-236)||(154715-154792)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 4088775 - 4088667
Alignment:
Q  7 taaataatactaccaaatcatcataaatcacaaccatagaaacagaaagacaatgcatttcaaatcaaagttacaaattcaatgctcaaatcaaagttta 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4088775 taaataaaactaccaaatcatcataaatcacaaccatagaaacagaacgacattgcatttcaaatcaaagttacaaattcaatgctcaaatcaaagttta 4088676  T
Q  107 ctttattta 115  Q
    |||||||||    
T  4088675 ctttattta 4088667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 18422647 - 18422762
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||||||||||||||       |||||||||||||||||||||| |||||| ||||| |||||||   |  |||||||||||||    
T  18422647 ggaaaattctatggtgaagtcataaaaatgacttttttggtgaagttaacactataacatcaaaaatataacgagtaacaccccaccgtttgtacaatga 18422746  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  18422747 catcaaaagttcagtc 18422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 19899949 - 19899837
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| |||||       |||||||||||||||||||||| |||||||||||| ||||||| | | |||||||| ||||     
T  19899949 ggaaaattctatggtgaagtcataataatgatttttttggtgaagttaacactataacatcaaaaatgtaacgagtaacacctcactgtttgtagaatgg 19899850  T
Q  221 catcaaaagttca 233  Q
    |||||||||||||    
T  19899849 catcaaaagttca 19899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 28564921 - 28564846
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||| |||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||    
T  28564921 tgaagttaacactataacatcaaaaatgtaatgagtaacaccttactgtttgtacaatgacatcaaaagttcagtc 28564846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 32267024 - 32267142
Alignment:
Q  115 aataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgta 214  Q
    ||||| |||||||| |||||||||||||||| |||||        |||||||||||| |||||||| |||||||||| | |||||||   | ||||||||    
T  32267024 aataaaggaaaattttatggtgaagtcataagaatgactttttttgtgaagttaacaatataacatcaaaaatgtaatgagtaacaccccactgtttgta 32267123  T
Q  215 caatgacatcaaaagttca 233  Q
    |||||||||||||||||||    
T  32267124 caatgacatcaaaagttca 32267142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 37451292 - 37451397
Alignment:
Q  131 atggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagt 230  Q
    |||||||||||||||||||||       ||| |||||||||||||||||| ||||||||||   |||||||  ||  |||||||||||||||||||||||    
T  37451292 atggtgaagtcataaaaatgacttttttggtaaagttaacactataacatcaaaaatgtaataagtaacaccctaccgtttgtacaatgacatcaaaagt 37451391  T
Q  231 tcagtc 236  Q
    ||||||    
T  37451392 tcagtc 37451397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 51128894 - 51128970
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||| |||||||||| | ||||||||  |  |||||||||||||||||||||||||||||    
T  51128894 gtgaagttaacactataacataaaaaatgtaatgagtaacactccaccgtttgtacaatgacatcaaaagttcagtc 51128970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 23999336 - 23999456
Alignment:
Q  114 taataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgt 213  Q
    ||||| ||||||||| |||||||||||||||| |||||       |||||||||||||||| ||||| |||||| ||||| |||||||   | | |||||    
T  23999336 taatattggaaaattttatggtgaagtcataagaatgatttttttggtgaagttaacactacaacataaaaaatataacgagtaacaccccactatttgt 23999435  T
Q  214 acaatgacatcaaaagttcag 234  Q
    | |||||||||||||||||||    
T  23999436 agaatgacatcaaaagttcag 23999456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 15752027 - 15752140
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| |||||||||||||| | |||||       |||||||||||||||||||||| |||||| ||  | ||||||| | | ||||||||||||| ||    
T  15752027 aaaattctatggtgaagtcatgagaatgacttttttggtgaagttaacactataacataaaaaatatagtgagtaacacctcactgtttgtacaatggca 15752126  T
Q  223 tcaaaagttcagtc 236  Q
    ||||||||||||||    
T  15752127 tcaaaagttcagtc 15752140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 10922761 - 10922835
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttca 233  Q
    |||||||||||||||||||||| |||||||||| | |||| ||   | |||||||||||||||||||||||||||    
T  10922761 ggtgaagttaacactataacataaaaaatgtaatgagtaagaccccactgtttgtacaatgacatcaaaagttca 10922835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 15382929 - 15383044
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||| ||||||||||       |||||| ||||||||||||||| |||||||||| | ||||||    |  ||||||||||||     
T  15382929 ggaaaattctatggtgaagttataaaaatgacttttttggtgaaattaacactataacatcaaaaatgtaatgagtaacatcccaccgtttgtacaatgt 15383028  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  15383029 catcaaaagttcagtc 15383044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 30254420 - 30254534
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||| |||| |||||       | ||||||||||| |||||||| |||||||||| | |||| ||   | ||||||||||||||    
T  30254420 ggaaaattctatggtgaagttataagaatgacttttttgttgaagttaacaatataacatcaaaaatgtaatgagtaatacac-actgtttgtacaatga 30254518  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  30254519 catcaaaagttcagtc 30254534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 1547283 - 1547397
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||||||| ||||||||   | ||||||||  | ||||||| || ||     
T  1547283 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaacactataacataaaaaatgttgtgagtaacactccactgtttgtgcagtgg 1547382  T
Q  221 catcaaaagttcagt 235  Q
    |||||||||||||||    
T  1547383 catcaaaagttcagt 1547397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32216089 - 32216166
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| |||||||||  | |||||||   | ||||||||||||| | ||||||||||||||    
T  32216089 ggtgaagttaacactataacatcaaaaatgtagtgagtaacacaccactgtttgtacaatggcgtcaaaagttcagtc 32216166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 3534967 - 3535043
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||| |||| |||   | ||||||| ||| ||||||| || |||||||||||||||||||    
T  3534967 gtgaagttaacactataacatcaaaagtgttgtgagtaacaccttactgtttgtgcagtgacatcaaaagttcagtc 3535043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 37619076 - 37618960
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgt--aacactttattgtttgtacaat 218  Q
    |||||||| ||||||||||| |||| |||||       |||||||||||||||||||||| |||||| ||| | ||  |||||   | |||||||| |||    
T  37619076 ggaaaattctatggtgaagttataagaatgacttttttggtgaagttaacactataacatcaaaaatttaatgagtaaaacaccccactgtttgtaaaat 37618977  T
Q  219 gacatcaaaagttcagt 235  Q
    |||||||||||||||||    
T  37618976 gacatcaaaagttcagt 37618960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 8222127 - 8222207
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacac 201  Q
    |||||||| || |||||||||||||||||||        ||||||||||||||||||||| |||||||||| | |||||||    
T  8222127 ggaaaattctacggtgaagtcataaaaatgacctttttagtgaagttaacactataacatcaaaaatgtaatgagtaacac 8222207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 27564046 - 27563971
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagt 235  Q
    ||||||||||||||||||| |||||||| ||  | ||||||||  | |||||||| | ||||||||||||||||||    
T  27564046 gtgaagttaacactataactttaaaaatatagtgagtaacactccactgtttgtatagtgacatcaaaagttcagt 27563971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 10182188 - 10182073
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| |||||||       ||||||||||| ||| |||||| |||||| ||  | |||||||   | |||||||||| ||     
T  10182188 ggaaaattctatggtgaagtcatgaaaatgacttttttggtgaagttaaaactgtaacataaaaaatatagtgcgtaacacgccactgtttgtacagtgg 10182089  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  10182088 catcaaaagttcagtc 10182073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 27763451 - 27763382
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagt 230  Q
    ||||||||||||||||||||| |||||||||| | |||||||   || ||||||| |||||||||||||||    
T  27763451 gtgaagttaacactataacatcaaaaatgtaatgagtaacac-ccatagtttgtagaatgacatcaaaagt 27763382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 238654 - 238578
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||  |||||||||||   | |||||| |  | ||||||||||||||||||||||||||||||    
T  238654 ggtgaagttaacactatagtattaaaaatgttgtgagtaaca-tccactgtttgtacaatgacatcaaaagttcagtc 238578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 7079157 - 7079128
Alignment:
Q  207 tgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  7079157 tgtttgtacaatgacatcaaaagttcagtc 7079128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 42721033 - 42721147
Alignment:
Q  119 atggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaat 218  Q
    |||||||||| |||||||||||||| |||||||       |||||||||| | ||||| ||| |||||| ||  | |||||||   | |||||||||| |    
T  42721033 atggaaaattctatggtgaagtcatgaaaatgatttttttggtgaagttagccctatatcataaaaaatatagtgagtaacaccccactgtttgtacagt 42721132  T
Q  219 gacatcaaaagttca 233  Q
     ||||||||||||||    
T  42721133 aacatcaaaagttca 42721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 48620672 - 48620748
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||| |||||||| |||| |||   | |||||||   | |||||||||| |||||||||||||||||||    
T  48620672 gtgaagttaacaatataacatcaaaagtgttgtgagtaacaccccactgtttgtacagtgacatcaaaagttcagtc 48620748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 31705785 - 31705671
Alignment:
Q  122 gaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgac 221  Q
    ||||||| ||||||||||||||||||||||       |||||||||||||||||||||| |||||||||||| |||||||  ||  ||||||||||||||    
T  31705785 gaaaattctatggtgaagtcataaaaatgatttttttggtgaagttaacactataacatcaaaaatgtaacgagtaacaccctaccgtttgtacaatgac 31705686  T
Q  222 atcaaaagttcagtc 236  Q
    ||||||||| |||||    
T  31705685 atcaaaagtccagtc 31705671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 35826658 - 35826543
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||        |||||||||| |||||||||| |||||||||  | ||||||||| |||||||||||| |||    
T  35826658 ggaaaattctatggtgaagtcatgataatgactttttttgtgaagttaatactataacatcaaaaatgtactgagtaacacttcattgtttgtacagtga 35826559  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  35826558 catcaaaagttcagtc 35826543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 24886142 - 24886219
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||| |||||||||| |||||||||| | |||||||   | ||||||||||||||||||||||||||||||    
T  24886142 ggtgaagttaatactataacatcaaaaatgtaatgagtaacaccccactgtttgtacaatgacatcaaaagttcagtc 24886219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 17158166 - 17158094
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttc 232  Q
    ||||||||||||||||||||| |||||||||| | ||||||||  |  |||||||||||||||||||||||||    
T  17158166 gtgaagttaacactataacataaaaaatgtaatgagtaacactccaccgtttgtacaatgacatcaaaagttc 17158094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 38528411 - 38528295
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| ||||||        | |||||||||||||||||||| |||| ||||| | |||||||   ||||||| |||| |||    
T  38528411 ggaaaattctatggtgaagtcatgaaaatggtttttctgatgaagttaacactataacatcaaaattgtaatgagtaacaccccattgtttatacagtga 38528312  T
Q  221 catcaaaagttcagtct 237  Q
    |||||||||||||||||    
T  38528311 catcaaaagttcagtct 38528295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 14919663 - 14919588
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||| |||||||| |||||||||| | ||||||| | | ||||| || |||||||||||||||||||||    
T  14919663 tgaagttaacattataacatcaaaaatgtaatgagtaacacctcactgtttatataatgacatcaaaagttcagtc 14919588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 27330344 - 27330420
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtct 237  Q
    |||||||||||||||||||||| |||| |||   | ||||||| ||| ||||||||||||| |||||||||||||||||    
T  27330344 ggtgaagttaacactataacatcaaaagtgtt--gagtaacaccttactgtttgtacaatggcatcaaaagttcagtct 27330420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 5112488 - 5112373
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| |||||||       ||||||||||| |||||||||| |||||| ||  | |||||||   | |||||||||| ||     
T  5112488 ggaaaattttatggtgaagtcatgaaaatgacttttttggtgaagttaatactataacataaaaaatatagtgagtaacaccccactgtttgtacagtgg 5112389  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  5112388 catcaaaagttcagtc 5112373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 36860423 - 36860538
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||  |||||||       ||||||||||||||||||  || ||||||||   | |||||||   | ||||||||||||||    
T  36860423 ggaaaattctatggtgaagtcacgaaaatgatttttctggtgaagttaacactatagtataaaaaatgttgtgagtaacaccccactgtttgtacaatga 36860522  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  36860523 catcaaaagttcagtc 36860538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 7209000 - 7208923
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||| | |||||| ||||||| |||| |||||||  ||  ||||||||| |||||||||||||||||||    
T  7209000 ggtgaagttaacattgtaacataaaaaatgcaacgagtaacaccctaccgtttgtacattgacatcaaaagttcagtc 7208923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 32563150 - 32563264
Alignment:
Q  122 gaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgac 221  Q
    ||||||| |||||||||||||| |||||||       | |||||||||||||||||||| |||| |||   | ||||||||  | ||| |||||| ||||    
T  32563150 gaaaattctatggtgaagtcattaaaatgatttttctgatgaagttaacactataacatcaaaagtgttgtgagtaacactccactgtctgtacagtgac 32563249  T
Q  222 atcaaaagttcagtc 236  Q
    |||||||||||||||    
T  32563250 atcaaaagttcagtc 32563264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 26317860 - 26317779
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacac 201  Q
    ||||||||| |||| ||||||||| |||||||       |||||||||||||||||||||| |||||| ||||| |||||||    
T  26317860 tggaaaattctatgatgaagtcatgaaaatgacttttttggtgaagttaacactataacatcaaaaatataacgagtaacac 26317779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 27318624 - 27318552
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagtt 231  Q
    |||||||||||||||| ||||| |||||||||  | |||||||   | |||||||||||||||||||||||||    
T  27318624 ggtgaagttaacactaaaacataaaaaatgtagtgagtaacacaccactgtttgtacaatgacatcaaaagtt 27318552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 22974257 - 22974145
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||| || | |||||       |||||||||||||||||||||| ||||| |||| | ||||||    | |||||||||||| |    
T  22974257 ggaaaattctatggtgaagttatgagaatgatttttttggtgaagttaacactataacatcaaaaaagtaatgagtaacatcccactgtttgtacaataa 22974158  T
Q  221 catcaaaagttca 233  Q
    |||||||||||||    
T  22974157 catcaaaagttca 22974145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 5829896 - 5830016
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataa----cattaaaaatgtaacgtgtaacactttattgtttgtac 215  Q
    ||||||||| || ||||||||| |||||||||       ||||||||||||| |||||    ||| |||||||||| | |||||||  ||  ||||||||    
T  5829896 tggaaaattctagggtgaagtcgtaaaaatgatttttttggtgaagttaacattataattaacataaaaaatgtaatgagtaacaccctaccgtttgtac 5829995  T
Q  216 aatgacatcaaaagttcagtc 236  Q
    |||||||||||||||| ||||    
T  5829996 aatgacatcaaaagtttagtc 5830016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 19119859 - 19119974
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||| ||| |||| |||  |  |||||||   | |||||||||| |||    
T  19119859 ggaaaattctatggtgaagtcatgagaatgacttttgtggtgaagttaacactatagcatcaaaagtgttgctagtaacaccccactgtttgtacagtga 19119958  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  19119959 catcaaaagttcagtc 19119974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 7693229 - 7693294
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaa 185  Q
    ||||||||| |||||||||||||| |||||||       |||||||||||||||||||||| ||||    
T  7693229 tggaaaattctatggtgaagtcattaaaatgacttttctggtgaagttaacactataacatcaaaa 7693294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 8742062 - 8741945
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacacttt-attgtttgtacaatg 219  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||| ||| |||| |||   | |||||||    |||||||||||||||    
T  8742062 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaacactatagcatcaaaagtgttgtgagtaacacccccattgtttgtacaatg 8741963  T
Q  220 acatcaaaagttcagtct 237  Q
     |||||||||||||||||    
T  8741962 gcatcaaaagttcagtct 8741945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 699190 - 699265
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||| ||| |||||| ||  | |||||||   | |||||||||| |||||||||||||||||||    
T  699190 tgaagttaacactatagcataaaaaatctagtgagtaacaccccactgtttgtacagtgacatcaaaagttcagtc 699265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 1429320 - 1429204
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||| | |||||||||||||| |||||||       |||||||||||||||||| ||| |||||| ||  | |||||||   | |||||||||| ||     
T  1429320 ggaaaaatctatggtgaagtcatgaaaatgactcttttggtgaagttaacactatagcatcaaaaatatagtgagtaacaccccactgtttgtacactgg 1429221  T
Q  221 catcaaaagttcagtct 237  Q
    |||||||| ||||||||    
T  1429220 catcaaaaattcagtct 1429204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 14409504 - 14409432
Alignment:
Q  118 aatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgta 190  Q
    ||||||||||| |||||||||||||| | |||||       |||||||| ||||||||||||| |||||||||    
T  14409504 aatggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaacactataacatcaaaaatgta 14409432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 22255193 - 22255296
Alignment:
Q  133 ggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaa-tgtaacgtgtaacactttattgtttgtacaatgacatcaaaagtt 231  Q
    ||||||||||||||||| |       ||||||||||||| |||||||| ||||| ||||| | |||||||   |  |||||||||||| |||||||||||    
T  22255193 ggtgaagtcataaaaataacttttttggtgaagttaacattataacatcaaaaaatgtaatgagtaacaccccaccgtttgtacaatggcatcaaaagtt 22255292  T
Q  232 cagt 235  Q
    ||||    
T  22255293 cagt 22255296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 12910350 - 12910416
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaat 187  Q
    |||||||| |||||||||||||| |||||||       ||||||||||| |||||||||| ||||||    
T  12910350 ggaaaattctatggtgaagtcatgaaaatgacttttttggtgaagttaaaactataacatcaaaaat 12910416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 21088855 - 21088826
Alignment:
Q  207 tgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  21088855 tgtttgtacaatgacatcaaaagttcagtc 21088826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 22255615 - 22255655
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacac 201  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  22255615 tgaagttaacactataacatcaaaaatgtaatgagtaacac 22255655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 37109846 - 37109962
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| ||||||||||||||||||||||       |||||||||||||||||||||| |||||||||| | |||||||   |  ||||||||||||    
T  37109846 tggaaaattctatggtgaagtcataaaaatgacttttttggtgaagttaacactataacataaaaaatgtaatgagtaacaccccaccgtttgtacaatg 37109945  T
Q  220 acatcaaaagttcagtc 236  Q
    |||||||||||||||||    
T  37109946 acatcaaaagttcagtc 37109962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 17842772 - 17842657
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||||||||||||||       |||||||||||||||||||||| |||||||||| | |||||||   |  |||||||||||||    
T  17842772 ggaaaattctatggtgaagtcataaaaatgacttttttggtgaagttaacactataacataaaaaatgtaatgagtaacaccccaccgtttgtacaatga 17842673  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||| ||||||    
T  17842672 catcaaaagctcagtc 17842657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 27283718 - 27283834
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| ||||||||||| ||||||||||       |||||||||||||||||||||| |||||||||| | |||||||   |  ||||||||||||    
T  27283718 tggaaaattctatggtgaagttataaaaatgatttttttggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccaccgtttgtacaatg 27283817  T
Q  220 acatcaaaagttcagtc 236  Q
    | |||||||||||||||    
T  27283818 aaatcaaaagttcagtc 27283834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 38258521 - 38258632
Alignment:
Q  122 gaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgac 221  Q
    ||||||| || |||||||||||||||||||       |||||||||||||||||||||| |||||||||| | |||||||   |  ||||||||||||||    
T  38258521 gaaaattctacggtgaagtcataaaaatgatttttttggtgaagttaacactataacataaaaaatgtaatgagtaacaccacaccgtttgtacaatgac 38258620  T
Q  222 atcaaaagttca 233  Q
    ||||||||||||    
T  38258621 atcaaaagttca 38258632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 24211717 - 24211829
Alignment:
Q  122 gaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgac 221  Q
    ||||||| |||||||||||||||| |||||       |||||||||||||||||||||| |||||||||| | |||||||  || ||||| || |||| |    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggtgaagttaacactataacatcaaaaatgtaatgagtaacaccctactgtttatagaatggc 24211816  T
Q  222 atcaaaagttcag 234  Q
    |||||||||||||    
T  24211817 atcaaaagttcag 24211829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 37346996 - 37347112
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| |||||||||||||| |||||||       ||||||||||| |||||| ||| |||||| ||| | |||||||   |||||||||||| ||    
T  37346996 tggaaaattttatggtgaagtcatgaaaatgatttttttggtgaagttaatactataccatcaaaaatataatgagtaacaccccattgtttgtacagtg 37347095  T
Q  220 acatcaaaagttcagtc 236  Q
    |||||||||||||||||    
T  37347096 acatcaaaagttcagtc 37347112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 32821239 - 32821124
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| |||||||       ||||||||||||| |||||||| |||||||||  | |||||||   | |||||||||||||     
T  32821239 ggaaaattctatggtgaagtcatgaaaatgatttttttggtgaagttaacaatataacatcaaaaatgtagtgagtaacacaccactgtttgtacaatgg 32821140  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  32821139 catcaaaagttcagtc 32821124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 31520915 - 31520794
Alignment:
Q  115 aataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgta 214  Q
    ||||| |||||||| |||| ||||||||| |||||||       ||||||||||| |||||| ||| |||||| ||  | ||||||||  ||||||||||    
T  31520915 aataacggaaaattttatgatgaagtcatgaaaatgacttttttggtgaagttaatactataccatcaaaaatatagtgagtaacactccattgtttgta 31520816  T
Q  215 caatgacatcaaaagttcagtc 236  Q
    || |||||||||||||||||||    
T  31520815 cagtgacatcaaaagttcagtc 31520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 38053499 - 38053575
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagt 235  Q
    ||||||||||| |||||||||| |||||||||| | |||| ||  || |||||||||||||||||||||||||||||    
T  38053499 ggtgaagttaatactataacataaaaaatgtaatgagtaaaaccctactgtttgtacaatgacatcaaaagttcagt 38053575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 7334809 - 7334883
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagt 235  Q
    |||||||||||||||||||| ||| |||||| | |||||||   | |||||||||||||||||||||||||||||    
T  7334809 tgaagttaacactataacataaaatatgtaatgagtaacaccccactgtttgtacaatgacatcaaaagttcagt 7334883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 27421527 - 27421450
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| |||| |||   | ||||||||  | ||||||||||||||||||||||||||||||    
T  27421527 ggtgaagttaacactataacatcaaaagtgttgtgagtaacactccactgtttgtacaatgacatcaaaagttcagtc 27421450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 18797304 - 18797414
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       ||||||||||||||||  |||| |||||||||| | |||||||   | ||||||||||||||    
T  18797304 ggaaaattctatggtgaagtcatgagaatgacttttttggtgaagttaacacta--acataaaaaatgtaatgagtaacaccccactgtttgtacaatga 18797401  T
Q  221 catcaaaagttca 233  Q
    |||||||||||||    
T  18797402 catcaaaagttca 18797414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 30055542 - 30055617
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||| || |||| ||||| | |||||||   | ||||||||||||||||||||||||||||||    
T  30055542 tgaagttaacactataatatcaaaattgtaatgagtaacaccccactgtttgtacaatgacatcaaaagttcagtc 30055617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 31579255 - 31579134
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaa-----cactttattgtttgtac 215  Q
    |||||||| |||||||||||||||| ||| |       |||||||||||||||||||||| |||||||||| | ||||     |||| | |  ||| |||    
T  31579255 ggaaaattctatggtgaagtcataagaataatttttttggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgtttaatttatac 31579156  T
Q  216 aatgacatcaaaagttcagtct 237  Q
    ||||||||||||||||||||||    
T  31579155 aatgacatcaaaagttcagtct 31579134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 5657669 - 5657551
Alignment:
Q  119 atggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaat 218  Q
    |||||||||| |||||||||||||| | |||||        ||||||||||||||||||||| |||| |||   | |||||||   | |||||||||| |    
T  5657669 atggaaaattctatggtgaagtcatgagaatgacttttctagtgaagttaacactataacatcaaaagtgttgtgagtaacaccccactgtttgtacagt 5657570  T
Q  219 gacatcaaaagttcagtct 237  Q
    | |||||||||||||||||    
T  5657569 ggcatcaaaagttcagtct 5657551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 32432511 - 32432543
Alignment:
Q  205 attgtttgtacaatgacatcaaaagttcagtct 237  Q
    |||||||||||||||||||||||||||||||||    
T  32432511 attgtttgtacaatgacatcaaaagttcagtct 32432543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 11071176 - 11071295
Alignment:
Q  117 taatggaaaattatatggtgaagtcataaaaatg-annnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtac 215  Q
    ||||| |||||| |||||||||||||| |||||| |       ||| ||||||  |||||| ||| |||||| || || ||||||||  | |||||||||    
T  11071176 taatgcaaaattctatggtgaagtcatgaaaatgtatttttttggtaaagttagtactatatcatcaaaaatatagcgagtaacactccactgtttgtac 11071275  T
Q  216 aatgacatcaaaagttcagt 235  Q
    | ||||||||||||||||||    
T  11071276 agtgacatcaaaagttcagt 11071295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 21991611 - 21991726
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| || ||||||||||| | |||||       |||||||||||||||||| ||| |||| |||  || |||||||   | |||||||||| ||     
T  21991611 ggaaaattctagggtgaagtcatgagaatgatttttatggtgaagttaacactatagcatcaaaattgttgcgagtaacaccccactgtttgtacagtgt 21991710  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  21991711 catcaaaagttcagtc 21991726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 26524513 - 26524398
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       ||||| |||||||||||||||| ||||||||   |  |||||||  ||||||||| || ||     
T  26524513 ggaaaattctatggtgaagtcatgagaatgacttttctggtgatgttaacactataacatcaaaaatgttgtgactaacactccattgtttgtgcagtgg 26524414  T
Q  221 catcaaaagttcagtc 236  Q
    |||||||||| |||||    
T  26524413 catcaaaagtccagtc 26524398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 29173601 - 29173630
Alignment:
Q  207 tgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  29173601 tgtttgtacaatgacatcaaaagttcagtc 29173630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 12390778 - 12390706
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagtt 231  Q
    |||||||||||||||||||||| |||| ||||| | ||||||    | ||||||| || ||||||||||||||    
T  12390778 ggtgaagttaacactataacatcaaaagtgtaatgagtaacatcccactgtttgtgcagtgacatcaaaagtt 12390706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 44413525 - 44413449
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtct 237  Q
    |||||||||||||||||||| |||||| ||  | |||||||   | |||||||||| ||| ||||||||||| ||||    
T  44413525 tgaagttaacactataacatcaaaaatatagtgagtaacaccccaatgtttgtacactgaaatcaaaagttcggtct 44413449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 20373484 - 20373367
Alignment:
Q  118 aatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaa 217  Q
    ||||||||||| ||| |||||||||||| |||||       ||||||||||| |||||||||| |||||||||||| |||||||   | |||||||||||    
T  20373484 aatggaaaattttatagtgaagtcataagaatgatttttttggtgaagttaatactataacatcaaaaatgtaacgagtaacaccccactgtttgtacaa 20373385  T
Q  218 tgacatcaaaagttcagt 235  Q
    ||||||||||||||||||    
T  20373384 tgacatcaaaagttcagt 20373367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 48354932 - 48355046
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       ||||||||||||||||||| ||||||||||||| | |||||||   |||||||||||||||     
T  48354932 ggaaaattctatggtgaagtcatgagaatgatttttatggtgaagttaacactataatattaaaaatgtaatgagtaacaccccattgtttgtacaatgg 48355031  T
Q  221 catcaaaagttcagt 235  Q
    |||||||||||||||    
T  48355032 catcaaaagttcagt 48355046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 3655387 - 3655272
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||||||||||||||       | | |||||||||||||||||| |||||||||| | |||||||   |  |||||||||||||    
T  3655387 ggaaaattttatggtgaagtcataaaaatgacttttttgataaagttaacactataacataaaaaatgtaatgagtaacaccccaccgtttgtacaatga 3655288  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  3655287 catcaaaagttcagtc 3655272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 40552444 - 40552329
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       || ||||||||||||||||||| |||||||||| | ||||||||  |  |||||||||||||    
T  40552444 ggaaaattctatggtgaagtcatgagaatgacttttttggagaagttaacactataacatcaaaaatgtaatgagtaacactccaccgtttgtacaatga 40552345  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  40552344 catcaaaagttcagtc 40552329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 4761796 - 4761719
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||| ||||||| || |||||||||| | ||||||||| | ||||||||||||||||||||||||||||||    
T  4761796 ggtgaagttaatactataatatcaaaaatgtaatgagtaacacttcactgtttgtacaatgacatcaaaagttcagtc 4761719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 47481513 - 47481623
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||  |||||       |||||||||||||||||||||| |||||||||| | |||||||   | |||||||| |||||    
T  47481513 ggaaaattttatggtgaagtcataggaatgatgtttttggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgtttgtagaatga 47481612  T
Q  221 catcaaaagtt 231  Q
    |||||||||||    
T  47481613 catcaaaagtt 47481623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 37203057 - 37203173
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| ||||||||||||||||||||||       | |||||||||||||||||||| |||| ||||  | |||||||   | |||||||||| ||    
T  37203057 tggaaaattctatggtgaagtcataaaaatgatttttttgatgaagttaacactataacatcaaaattgtagtgagtaacaccccactgtttgtacagtg 37203156  T
Q  220 acatcaaaagttcagtc 236  Q
     ||||||||||||||||    
T  37203157 gcatcaaaagttcagtc 37203173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 26941445 - 26941330
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| |||||       ||||||||||||||||||| || |||| | ||| | |||||||   | |||||||| |||||    
T  26941445 ggaaaattctatggtgaagtcataagaatgatttttttggtgaagttaacactataaaatcaaaattataatgagtaacaccccactgtttgtataatga 26941346  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  26941345 catcaaaagttcagtc 26941330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 35844311 - 35844432
Alignment:
Q  115 aataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgta 214  Q
    ||||| |||||||| |||||||||||||| | |||||       |||||||||||||||||||||  ||||||||   | ||||||| | | ||||||||    
T  35844311 aataaaggaaaattctatggtgaagtcatgataatgacttttctggtgaagttaacactataacaacaaaaatgttgtgagtaacacctcactgtttgta 35844410  T
Q  215 caatgacatcaaaagttcagtc 236  Q
    || |||||||||||||| ||||    
T  35844411 cagtgacatcaaaagtttagtc 35844432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 46297945 - 46297832
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| |||||||||||||| |||||||       |||||||||||||||||||||| |||||| ||  | |||||||   | ||||||||||||| |     
T  46297945 aaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaacactataacatcaaaaatatagtgagtaacacaccactgtttgtacaatggcg 46297846  T
Q  223 tcaaaagttcagtc 236  Q
    ||||||||||||||    
T  46297845 tcaaaagttcagtc 46297832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 51213167 - 51213051
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| |||||||||||||| | |||||       ||||||||||||||| |||||| |||||||||| | | |||||   | |||||||||||||    
T  51213167 tggaaaattctatggtgaagtcatgagaatgacttttttggtgaagttaacactgtaacataaaaaatgtaatgagcaacaccccactgtttgtacaatg 51213068  T
Q  220 acatcaaaagttcagtc 236  Q
     ||||||||||| ||||    
T  51213067 gcatcaaaagttgagtc 51213051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 40936020 - 40936097
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||| ||| |||| |||  || ||||||| | ||||||| |||| |||||||||||||||||||    
T  40936020 ggtgaagttaacactatagcatcaaaagtgttgcgagtaacacctcattgtttatacagtgacatcaaaagttcagtc 40936097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 29099384 - 29099461
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| ||||||||   | |||||||   | |||||||||| ||||||| |||||||||||    
T  29099384 ggtgaagttaacactataacataaaaaatgtcgtgagtaacaccccactgtttgtacagtgacatctaaagttcagtc 29099461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 42506214 - 42506145
Alignment:
Q  167 taacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||| |||| ||||| | |||| ||   | ||||||||||||||||||||||||||||||    
T  42506214 taacactataacatcaaaattgtaatgagtaataccccactgtttgtacaatgacatcaaaagttcagtc 42506145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 54505839 - 54505912
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcag 234  Q
    |||||||||||||||||||| |||||||||| | |||||||   ||| ||| || ||||||||||||| |||||    
T  54505839 tgaagttaacactataacatcaaaaatgtaatgagtaacaccccattatttatagaatgacatcaaaaattcag 54505912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 21009948 - 21009874
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcag 234  Q
    ||||| || |||||||||||| |||||||||| | |||||||   | | |||||| |||||||||||||||||||    
T  21009948 gtgaatttgacactataacatcaaaaatgtaatgagtaacaccccactatttgtagaatgacatcaaaagttcag 21009874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 7327629 - 7327552
Alignment:
Q  160 gtgaagttaa-cactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||| ||||||||||| |||| |||   | ||||||||  ||| |||||||| |||||||||||||||||||    
T  7327629 gtgaagttaaacactataacatcaaaagtgttgtgagtaacactccattatttgtacagtgacatcaaaagttcagtc 7327552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 34133012 - 34133041
Alignment:
Q  207 tgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  34133012 tgtttgtacaatgacatcaaaagttcagtc 34133041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 24489108 - 24489032
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||| ||||||  |||||||||||   | |||||| |  | |||||| |||||||||||||||||||||||    
T  24489108 gtgaagttaagactatagtattaaaaatgttgtgagtaacattccactgtttgcacaatgacatcaaaagttcagtc 24489032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 45174532 - 45174611
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgt--gtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| |||| |||   ||  ||||||||| | |||||||||| |  ||||||||||||||||    
T  45174532 ggtgaagttaacactataacatcaaaagtgttgtgtgagtaacacttcactgtttgtacagtagcatcaaaagttcagtc 45174611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 43643786 - 43643674
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||||||| |||||||||| | |||||||| || ||||||||||||||    
T  43643786 ggaaaattctatggtgaagtcatgagaatgactattttggtgaagttaacactataacatcaaaaatgtaatgagtaacactctactgtttgtacaatga 43643687  T
Q  221 catcaaaagttca 233  Q
    |||| ||||||||    
T  43643686 catccaaagttca 43643674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 10555394 - 10555281
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| || ||||||||||| | |||||       |||||||||||||||||||||| |||||||||| | ||||||||  | |||||||||||||    
T  10555394 tggaaaattctacggtgaagtcatgagaatgacttttttggtgaagttaacactataacataaaaaatgtaatgagtaacactccactgtttgtacaatg 10555295  T
Q  220 acatcaaaagttca 233  Q
    ||||||||||||||    
T  10555294 acatcaaaagttca 10555281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 1204926 - 1205041
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| || ||||||||||| | |||||       |||||||||||||||||||||| |||||||||  | ||||||| | | ||||||||||||||    
T  1204926 ggaaaattttacggtgaagtcatgagaatgacttttctggtgaagttaacactataacataaaaaatgtagtgagtaacacatcactgtttgtacaatga 1205025  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  1205026 catcaaaagttcagtc 1205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 1150296 - 1150181
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| |||||       |||||||||||| ||||||||| |||||||||| | ||||||    | ||||||||||| ||    
T  1150296 ggaaaattctatggtgaagtcataagaatgacttttttggtgaagttaacgctataacatcaaaaatgtaatgagtaacatcccactgtttgtacaacga 1150197  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  1150196 catcaaaagttcagtc 1150181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 23854584 - 23854507
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| |||||||||| | |||||||   | ||||||| ||||||||||||||||||||||    
T  23854584 ggtgaagttaacactataacataaaaaatgtaatgagtaacacccaactgtttgtgcaatgacatcaaaagttcagtc 23854507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 30654774 - 30654661
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| | |||       |||||||||||||||||||||| |||||||||| | |||||||   | |||||||  |||||    
T  30654774 ggaaaattttatggtgaagtcataagagtgatttttttggtgaagttaacactataacataaaaaatgtaatgagtaacaccccactgtttgttgaatga 30654675  T
Q  221 catcaaaagttcag 234  Q
    ||||||||||||||    
T  30654674 catcaaaagttcag 30654661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 8803963 - 8803888
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcag 234  Q
    |||||||||||||||||||||| |||||||||| | ||||||||  | | |||||| |||||||||||||||||||    
T  8803963 ggtgaagttaacactataacatcaaaaatgtaatgagtaacactccactatttgtagaatgacatcaaaagttcag 8803888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 37970672 - 37970597
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcag 234  Q
    |||||||||||||||||||||| |||||||||| | |||||||   | ||||||||||||| ||||||||||||||    
T  37970672 ggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgtttgtacaatgccatcaaaagttcag 37970597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 6098715 - 6098594
Alignment:
Q  115 aataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgta 214  Q
    |||||||||||||| |||||||||||||| ||||| |       ||||||||||| |||||| ||| |||||| ||  | |||||||   | ||||||||    
T  6098715 aataatggaaaattctatggtgaagtcatgaaaataacttttttggtgaagttaatactatagcatcaaaaatatagtgagtaacaccccactgtttgta 6098616  T
Q  215 caatgacatcaaaagttcagtc 236  Q
    || |||||||||||||||||||    
T  6098615 cagtgacatcaaaagttcagtc 6098594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 13307621 - 13307737
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| |||||||||||||| | |||||       |||||||||||||||||||||| |||| |||   | ||||||| | | | |||||||| ||    
T  13307621 tggaaaattctatggtgaagtcatgagaatgatttttctggtgaagttaacactataacatcaaaagtgttgtgagtaacacctcactatttgtacagtg 13307720  T
Q  220 acatcaaaagttcagtc 236  Q
    |||||||||||||||||    
T  13307721 acatcaaaagttcagtc 13307737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 36695157 - 36695042
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||  |||||||       | ||||||||||||||||| || ||||||||   | |||||||   | ||||||||||||||    
T  36695157 ggaaaattctatggtgaagtcaggaaaatgacttttctgatgaagttaacactataatatcaaaaatgttgtgagtaacaccccactgtttgtacaatga 36695058  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  36695057 catcaaaagttcagtc 36695042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 12876148 - 12876223
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||| || ||||||||   | |||||||   | ||||||||||||||||||||||||||||||    
T  12876148 tgaagttaacactataatataaaaaatgttgtgagtaacacccaactgtttgtacaatgacatcaaaagttcagtc 12876223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 15009240 - 15009306
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaa 186  Q
    ||||||||| |||||||||||||||| |||||       |||||||||||||||||||||| |||||    
T  15009240 tggaaaattctatggtgaagtcataagaatgacttttttggtgaagttaacactataacatcaaaaa 15009306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 34463670 - 34463701
Alignment:
Q  204 tattgtttgtacaatgacatcaaaagttcagt 235  Q
    ||||||||||||||||||||||||||||||||    
T  34463670 tattgtttgtacaatgacatcaaaagttcagt 34463701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 9864233 - 9864262
Alignment:
Q  207 tgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  9864233 tgtttgtacaatgacatcaaaagttcagtc 9864262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 31934039 - 31933962
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||| | || |||||| ||| | |||||||   | | ||| ||||||||||||||||||||||||    
T  31934039 ggtgaagttaacactatgatatcaaaaatataatgagtaacaccccactctttatacaatgacatcaaaagttcagtc 31933962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 465843 - 465956
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| |||||||||||||| |||||||       |||||||||||||| ||||||| |||| |||   | |||||||   | |||||||||| || ||    
T  465843 aaaattttatggtgaagtcattaaaatgacttttgtggtgaagttaacacgataacatcaaaagtgttgtgagtaacaccccactgtttgtacagtggca 465942  T
Q  223 tcaaaagttcagtc 236  Q
    |||||| |||||||    
T  465943 tcaaaaattcagtc 465956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 16222949 - 16222977
Alignment:
Q  208 gtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||||||||||    
T  16222949 gtttgtacaatgacatcaaaagttcagtc 16222977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 25184113 - 25184225
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||||||| |||||||||| | |||||||| || ||||||||||||||    
T  25184113 ggaaaattctatggtgaagtcatgagaatgactattttggtgaagttaacactataacatcaaaaatgtaatgagtaacactctactgtttgtacaatga 25184212  T
Q  221 catcaaaagttca 233  Q
    |||| ||||||||    
T  25184213 catccaaagttca 25184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 55478106 - 55477987
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacact----ttattgtttgtaca 216  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||||||| |||||||||||| ||||||||    |  |||||||||||    
T  55478106 ggaaaattctatggtgaagtcatgagaatgatttttttggtgaagttaacactataacatcaaaaatgtaacgagtaacactccactgtttgtttgtaca 55478007  T
Q  217 atgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||    
T  55478006 atgacatcaaaagttcagtc 55477987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 39397915 - 39398034
Alignment:
Q  118 aatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaa 217  Q
    ||||||||||| |||||||||||||| | |||||       ||||||||||||||||||||||||||| |||   | |||||||   ||||||||||||     
T  39397915 aatggaaaattctatggtgaagtcattagaatgacttttatggtgaagttaacactataacattaaaagtgttgtgagtaacaccccattgtttgtacag 39398014  T
Q  218 tgacatcaaaagttcagtct 237  Q
    ||||||||||||||||||||    
T  39398015 tgacatcaaaagttcagtct 39398034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 879721 - 879649
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagtt 231  Q
    |||||||| ||||||||||||| |||||||||| | ||||||| | |||||||||||||||||||||||||||    
T  879721 ggtgaagtaaacactataacatcaaaaatgtaatgagtaacacctcattgtttgtacaatgacatcaaaagtt 879649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 32912791 - 32912678
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| |||||       |||||||||||||||||||||| |||||||||| | |||||||  || | |||||| |||||    
T  32912791 ggaaaattctatggtgaagtcataagaatgacttttttggtgaagttaacactataacatcaaaaatgtaatgagtaacaccctagtatttgtagaatga 32912692  T
Q  221 catcaaaagttcag 234  Q
     |||||||||||||    
T  32912691 tatcaaaagttcag 32912678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 34361702 - 34361589
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| |||||       |||||||||||||||||||||| |||||||||| | |||||||   | |||||||| |||||    
T  34361702 ggaaaattctatggtgaagtcataagaatgacttttttggtgaagttaacactataacataaaaaatgtaatgagtaacaccccactgtttgtagaatga 34361603  T
Q  221 catcaaaagttcag 234  Q
    ||| ||||||||||    
T  34361602 cattaaaagttcag 34361589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 50697242 - 50697354
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| || |||||||||||||||||||        ||||||| ||||||||||||| |||||| ||||| |||||||  ||  |||||||||||||    
T  50697242 ggaaaattctacggtgaagtcataaaaatgatttttttagtgaagtaaacactataacataaaaaatataacgagtaacaccctaccgtttgtacaatga 50697341  T
Q  221 catcaaaagttca 233  Q
    |||||||||||||    
T  50697342 catcaaaagttca 50697354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 37663963 - 37663837
Alignment:
Q  108 tttatttaataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttatt 207  Q
    ||||||||||   |||||||| |||||||||||||||| |||||       | ||||||||||||||  ||||||||| ||||| | |||||||   | |    
T  37663963 tttatttaatgtaggaaaattctatggtgaagtcataagaatgacttttttgatgaagttaacacta--acattaaaactgtaatgagtaacaccccact 37663866  T
Q  208 gtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||||||||||    
T  37663865 gtttgtacaatgacatcaaaagttcagtc 37663837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 25701274 - 25701153
Alignment:
Q  115 aataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgta 214  Q
    ||||| |||||||| |||||||||||||| | |||||       ||| ||||||||| |||||||| |||| ||||  | |||||||  || ||||||||    
T  25701274 aataaaggaaaattttatggtgaagtcatgataatgacttttttggtaaagttaacattataacatcaaaagtgtagtgagtaacaccctactgtttgta 25701175  T
Q  215 caatgacatcaaaagttcagtc 236  Q
    || |||||||||||||||||||    
T  25701174 cagtgacatcaaaagttcagtc 25701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 27396618 - 27396726
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| |||||||||||||| | |||||       ||||||||||||| |||| |||||||| ||| | | |||||||  || ||||||||||||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggtgaagttaacattatagcattaaaagtgttatgagtaacaccctactgtttgtacaatgaca 27396717  T
Q  223 tcaaaagtt 231  Q
    |||||||||    
T  27396718 tcaaaagtt 27396726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 3042611 - 3042726
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||| ||||||||||||       ||||||||||||||||||||||  ||||||||| | |||| ||   |  |||| ||||||||    
T  3042611 ggaaaattctatggtgaaatcataaaaatgatttttttggtgaagttaacactataacatacaaaatgtaatgagtaataccccaccgtttatacaatga 3042710  T
Q  221 catcaaaagttcagtc 236  Q
    |||||||| |||||||    
T  3042711 catcaaaaattcagtc 3042726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 19089664 - 19089549
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| ||| |       | ||||||||||||||||| || |||| ||||| | |||||||   | |||||||| |||||    
T  19089664 ggaaaattctatggtgaagtcataagaataacttttttgatgaagttaacactataatatcaaaattgtaatgagtaacaccccactgtttgtataatga 19089565  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  19089564 catcaaaagttcagtc 19089549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 19440821 - 19440744
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||| |||||||||||||||| |||||||||| |  |||||||  |  |||||||||||| ||||||||||||||||    
T  19440821 ggtgatgttaacactataacatcaaaaatgtaatgattaacactccaccgtttgtacaatggcatcaaaagttcagtc 19440744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 36493902 - 36493784
Alignment:
Q  118 aatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaa 217  Q
    |||| |||||| |||||||||||||| ||||| |       ||||||||||| |||||| ||| |||||| ||  | |||||||   ||||||||||||     
T  36493902 aatgaaaaattctatggtgaagtcatgaaaataacttttttggtgaagttaatactataccatcaaaaatatagtgagtaacaccccattgtttgtacag 36493803  T
Q  218 tgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||    
T  36493802 tgacatcaaaagttcagtc 36493784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 30002840 - 30002719
Alignment:
Q  116 ataatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtac 215  Q
    |||| |||||| | |||||||||||||| |||||||       ||||||||||||||| || ||| |||| |||   | ||||||| | | |||||||||    
T  30002840 ataaaggaaaactctatggtgaagtcattaaaatgatttttctggtgaagttaacactgtagcatcaaaagtgttgtgagtaacacctcactgtttgtac 30002741  T
Q  216 aatgacatcaaaagttcagtct 237  Q
    | ||||||||||||||||||||    
T  30002740 agtgacatcaaaagttcagtct 30002719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 53124286 - 53124367
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacac 201  Q
    |||||||||||||| ||||||||| |||||||       |||||||||||||||||||||| |||||| ||| | |||||||    
T  53124286 tggaaaattatatgatgaagtcattaaaatgatttttttggtgaagttaacactataacatcaaaaatataatgagtaacac 53124367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 4396326 - 4396406
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacac 201  Q
    |||||||| ||| ||||||||||||||||||        ||||||||||||||||||||| |||||||||| | |||||||    
T  4396326 ggaaaattctatagtgaagtcataaaaatgacttttttagtgaagttaacactataacataaaaaatgtaatgagtaacac 4396406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 29584371 - 29584295
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtct 237  Q
    |||||||||||||||||||||| |||| |||   | ||||||| | | ||||||||||||| |||||||||||||||||    
T  29584371 ggtgaagttaacactataacatcaaaagtgtt--gagtaacacctcactgtttgtacaatggcatcaaaagttcagtct 29584295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 35021246 - 35021136
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| |||||||       ||||||||||||| |||||||| |||||||||  | |||||||   | |||||||||| ||     
T  35021246 ggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaacattataacatcaaaaatgtagtgagtaacacaccactgtttgtacattgg 35021147  T
Q  221 catcaaaagtt 231  Q
    | |||||||||    
T  35021146 cgtcaaaagtt 35021136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 234
Target Start/End: Original strand, 42199729 - 42199842
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||| | ||||||||| |||||| |||||       ||||||||||| |||||||||| |||||||||| | |||| ||   ||| |||||| |||||    
T  42199729 ggaaaaatctatggtgaaatcataagaatgatttttttggtgaagttaatactataacatcaaaaatgtaatgagtaataccccattatttgtagaatga 42199828  T
Q  221 catcaaaagttcag 234  Q
    ||| ||||||||||    
T  42199829 cataaaaagttcag 42199842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 46884249 - 46884173
Alignment:
Q  117 taatggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacg 193  Q
    |||||||||||| ||| ||||||||||||||||||       || |||||||||||  |||||| ||||||||||||    
T  46884249 taatggaaaattctatagtgaagtcataaaaatgacttttttggcgaagttaacaccgtaacataaaaaatgtaacg 46884173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 23761114 - 23761187
Alignment:
Q  163 aagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||| |||| |||   | ||||||| | | |||||||| | |||||||||||||||||||    
T  23761114 aagttaacactataacatcaaaagtgttgtgagtaacacctcactgtttgtatagtgacatcaaaagttcagtc 23761187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 37775670 - 37775780
Alignment:
Q  122 gaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgac 221  Q
    ||||||| || ||||||||||| |||||||       |||||||||| |||||||| |||||||||||   | |||||||   | |||||||||| || |    
T  37775670 gaaaattctacggtgaagtcattaaaatgatttttttggtgaagttagcactataatattaaaaatgttgtgagtaacaccccactgtttgtacagtggc 37775769  T
Q  222 atcaaaagttc 232  Q
    |||||||||||    
T  37775770 atcaaaagttc 37775780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 17167753 - 17167825
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttca 233  Q
    ||||||||||| ||||| || ||||||||   | |||||||   | |||||||||||||||||||||||||||    
T  17167753 tgaagttaacattataatatcaaaaatgttgtgagtaacaccccactgtttgtacaatgacatcaaaagttca 17167825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 17173330 - 17173402
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttca 233  Q
    ||||||||||| ||||| || ||||||||   | |||||||   | |||||||||||||||||||||||||||    
T  17173330 tgaagttaacattataatatcaaaaatgttgtgagtaacaccccactgtttgtacaatgacatcaaaagttca 17173402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 37905708 - 37905823
Alignment:
Q  120 tggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatg 219  Q
    ||||||||| ||||||||||| ||||||||||       |||||||||||||||||||||| |||||||||||| |||||||   |  ||||||||||||    
T  37905708 tggaaaattctatggtgaagttataaaaatgatttttt-ggtgaagttaacactataacataaaaaatgtaacgagtaacaccccaccgtttgtacaatg 37905806  T
Q  220 acatcaaaagttcagtc 236  Q
    |||||||||||||||||    
T  37905807 acatcaaaagttcagtc 37905823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 43648410 - 43648333
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| |||||||||| | ||||||| | | |||||||| |||||||||||||||||||||    
T  43648410 ggtgaagttaacactataacatcaaaaatgtaatgagtaacacctcactgtttgtataatgacatcaaaagttcagtc 43648333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 19289486 - 19289416
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagtt 231  Q
    |||||||||||||||||||| |||||| ||| | |||||||   |||||||||||||||||||||||||||    
T  19289486 tgaagttaacactataacatcaaaaatataatgagtaacaccccattgtttgtacaatgacatcaaaagtt 19289416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 35958907 - 35959022
Alignment:
Q  119 atggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaat 218  Q
    |||||||||| |||| |||||||||||||||||       |||||||||  ||||||||||| |||||||||| | | |||||   | ||||||||||||    
T  35958907 atggaaaattctatgatgaagtcataaaaatgacttttttggtgaagttgccactataacataaaaaatgtaatgagcaacaccccactgtttgtacaat 35959006  T
Q  219 gacatcaaaagttcag 234  Q
    ||||| ||||||||||    
T  35959007 gacattaaaagttcag 35959022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 33551150 - 33551073
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtct 237  Q
    ||||||||||||||||||||| |||||||||  | |||||||   | |||||||||||||||||||||||||| ||||    
T  33551150 gtgaagttaacactataacatcaaaaatgtagtgagtaacaccccactgtttgtacaatgacatcaaaagttcggtct 33551073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 11366584 - 11366471
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||| |||||| |||||       |||||| ||||||||||||||| |||||||||| | ||||||  | | | |||||| |||||    
T  11366584 ggaaaattctatggtgaaatcataagaatgacttttttggtgaaattaacactataacatcaaaaatgtaatgagtaacatctcactatttgtataatga 11366485  T
Q  221 catcaaaagttcag 234  Q
    ||||||||||||||    
T  11366484 catcaaaagttcag 11366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 4478365 - 4478484
Alignment:
Q  118 aatggaaaattatatggtgaagtcata-aaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtaca 216  Q
    ||||||||||| ||| ||||||||||| |||||||       |||||||||||||||||||||| |||| |||   | ||||||||  ||||||||||||    
T  4478365 aatggaaaattctatagtgaagtcatagaaaatgatatttttggtgaagttaacactataacatcaaaagtgttgtgagtaacactccattgtttgtaca 4478464  T
Q  217 atgacatcaaaagttcagtc 236  Q
     || ||||||||||| ||||    
T  4478465 gtggcatcaaaagtttagtc 4478484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 33709397 - 33709320
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||||||| |||| |||  || ||||||||  | |||| ||||| |||||||||||||||||||    
T  33709397 ggtgaagttaacactataacatcaaaagtgttgcgagtaacactccactgttagtacagtgacatcaaaagttcagtc 33709320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 17054299 - 17054190
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||||||   |||||       ||||||||||| |||||||||| |||||||||    ||||||  | ||||||||||||||||    
T  17054299 ggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagttaatactataacatcaaaaatgtagtaagtaacatctcattgtttgtacaatga 17054200  T
Q  221 catcaaaagt 230  Q
    ||||||||||    
T  17054199 catcaaaagt 17054190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 17071940 - 17071829
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| ||||||||||||||   |||||       |||||||||||||||||||||  |||||||||    ||||||  | ||| ||||||||||||    
T  17071940 ggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagttaacactataacaacaaaaatgtagtaagtaacatctcattatttgtacaatga 17071841  T
Q  221 catcaaaagttc 232  Q
    ||||||||||||    
T  17071840 catcaaaagttc 17071829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 27350103 - 27350026
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||||||||| ||| ||||||||   | |||||||   | |||||||||| |||||||||||||||||||    
T  27350103 ggtgaagttaacactatagcatcaaaaatgttgtgagtaacaccacactgtttgtacagtgacatcaaaagttcagtc 27350026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 2325534 - 2325458
Alignment:
Q  160 gtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||| |||||||| | |||||||  | |||||||   |||||||||||| || ||||||||||||||||    
T  2325534 gtgaagttaacaatataacatcataaatgtattgagtaacaccccattgtttgtacactggcatcaaaagttcagtc 2325458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 19313850 - 19313967
Alignment:
Q  119 atggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaat 218  Q
    |||||||||| |||||||||||||| | |||||       ||||||||||||| |||| ||| |||| |||   | ||||||| ||| | ||| |||| |    
T  19313850 atggaaaattctatggtgaagtcattagaatgacttttctggtgaagttaacattatagcatcaaaagtgttgtgagtaacaccttactatttatacagt 19313949  T
Q  219 gacatcaaaagttcagtc 236  Q
    ||||||||||||||||||    
T  19313950 gacatcaaaagttcagtc 19313967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 36641988 - 36642101
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| |||||||||||||| | |||||       |||||| |||| |||||| ||| |||| |||  || ||||||| | | |||||||||| |||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggtgaaattaatactatagcatcaaaagtgttgcgagtaacacctcactgtttgtacagtgaca 36642087  T
Q  223 tcaaaagttcagtc 236  Q
    ||||||||||||||    
T  36642088 tcaaaagttcagtc 36642101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 3176979 - 3177054
Alignment:
Q  161 tgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||| ||||||| || ||||||||   | |||||||   | ||||||||||||||||||||||||||||||    
T  3176979 tgaagttaatactataatatcaaaaatgttttgagtaacacgcaactgtttgtacaatgacatcaaaagttcagtc 3177054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 39167480 - 39167451
Alignment:
Q  207 tgtttgtacaatgacatcaaaagttcagtc 236  Q
    ||||||||||||||||||||||||||||||    
T  39167480 tgtttgtacaatgacatcaaaagttcagtc 39167451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 7889 - 8002
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| ||||||||||| |||| |||||       | |||||||||||||||||||| |||| ||||| | |||||||   | ||||||||||||||||    
T  7889 aaaattctatggtgaagttataagaatgacttttttgatgaagttaacactataacatcaaaattgtaatgagtaacaccccactgtttgtacaatgaca 7988  T
Q  223 tcaaaagttcagtc 236  Q
    ||||||||||||||    
T  7989 tcaaaagttcagtc 8002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 7055399 - 7055286
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||||| |||||       |||||||||||||||||||||| |||||| |||   ||||||| | | | |||||| |||||    
T  7055399 ggaaaattttatggtgaagtcataagaatgatttttttggtgaagttaacactataacataaaaaatataattagtaacacctcactatttgtagaatga 7055300  T
Q  221 catcaaaagttcag 234  Q
    ||||||||||||||    
T  7055299 catcaaaagttcag 7055286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 1945872 - 1945947
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcag 234  Q
    |||||||||||||||||||||| |||||||||| | |||||||   | |||||||| |||||||||||||||||||    
T  1945872 ggtgaagttaacactataacatcaaaaatgtaatgagtaacaccccactgtttgtagaatgacatcaaaagttcag 1945947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 234
Target Start/End: Original strand, 5627391 - 5627504
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| || ||||||||||||| |||||       |||||||||||||||||||||| |||||| ||| | |||||||   | | |||||| |||||    
T  5627391 ggaaaattctaaggtgaagtcataagaatgacttttttggtgaagttaacactataacataaaaaatataatgagtaacaccccactatttgtagaatga 5627490  T
Q  221 catcaaaagttcag 234  Q
    ||||||||||||||    
T  5627491 catcaaaagttcag 5627504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 4319007 - 4318895
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       |||||||||||||||||||||| |||| ||| | | |||||||   | |||||||||| |||    
T  4319007 ggaaaattctatggtgaagtcatgagaatgacttttttggtgaagttaacactataacatcaaaagtgttatgagtaacaccccactgtttgtacagtga 4318908  T
Q  221 catcaaaagttca 233  Q
    |||||||||||||    
T  4318907 catcaaaagttca 4318895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 8513233 - 8513348
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||| | |||||       ||||||||||||||||||| || |||| |||   | |||||||   | |||||||||| |||    
T  8513233 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaacactataatatcaaaagtgttgtgagtaacaccccactgtttgtacagtga 8513332  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  8513333 catcaaaagttcagtc 8513348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 26301971 - 26301941
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatga 151  Q
    |||||||||||||||||||||||||||||||    
T  26301971 ggaaaattatatggtgaagtcataaaaatga 26301941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 6091313 - 6091253
Alignment:
Q  175 taacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagt 235  Q
    |||||| |||||||||  | |||||||   ||||||||||||||| |||||||||||||||    
T  6091313 taacataaaaaatgtagtgagtaacacaccattgtttgtacaatgccatcaaaagttcagt 6091253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 146199 - 146088
Alignment:
Q  123 aaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgaca 222  Q
    |||||| || ||||||||||||| |||||       ||| ||||||||| |||||||| |||||||||| | |||||||   ||| |||||| |||||||    
T  146199 aaaattctacggtgaagtcataagaatgatttttttggttaagttaacattataacataaaaaatgtaatgagtaacaccccattatttgtagaatgaca 146100  T
Q  223 tcaaaagttcag 234  Q
    ||||||||||||    
T  146099 tcaaaagttcag 146088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 134 - 249
Alignment:
Q  121 ggaaaattatatggtgaagtcataaaaatgannnnnnnggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatga 220  Q
    |||||||| |||||||||||||  |||||||       ||||||||||||||| ||  || ||||||||   | ||||||||  | |||||||||||||     
T  134 ggaaaattctatggtgaagtcacgaaaatgacttttctggtgaagttaacactgtagtataaaaaatgttgtgagtaacactccactgtttgtacaatgg 233  T
Q  221 catcaaaagttcagtc 236  Q
    ||||||||||||||||    
T  234 catcaaaagttcagtc 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 408559 - 408498
Alignment:
Q  175 taacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||| |||||||||| | ||||||| |||  ||||||| ||||| |||||||||||||||    
T  408559 taacatcaaaaatgtaatgagtaacaccttaccgtttgtaaaatgaaatcaaaagttcagtc 408498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 43995 - 44072
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||| |||||| || |||||||||| | |||||||    |||||||||||||| ||| ||||||||||||    
T  43995 ggtgaagttaacgctataatatcaaaaatgtaatgagtaacaccccgttgtttgtacaatggcataaaaagttcagtc 44072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 154792 - 154715
Alignment:
Q  159 ggtgaagttaacactataacattaaaaatgtaacgtgtaacactttattgtttgtacaatgacatcaaaagttcagtc 236  Q
    |||||||||||| |||||| || |||||||||| | |||||||    |||||||||||||| ||| ||||||||||||    
T  154792 ggtgaagttaacgctataatatcaaaaatgtaatgagtaacaccccgttgtttgtacaatggcataaaaagttcagtc 154715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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