View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_11 (Length: 643)

Name: NF3002_low_11
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_11
NF3002_low_11
[»] chr1 (14 HSPs)
chr1 (204-634)||(24352580-24353010)
chr1 (201-634)||(24340212-24340645)
chr1 (394-633)||(24367144-24367395)
chr1 (466-634)||(24322835-24323003)
chr1 (24-119)||(24309834-24309929)
chr1 (456-520)||(24415834-24415898)
chr1 (24-110)||(24340071-24340157)
chr1 (251-439)||(24310022-24310213)
chr1 (393-443)||(24369476-24369526)
chr1 (461-594)||(24310265-24310398)
chr1 (469-592)||(24369581-24369704)
chr1 (217-297)||(24322273-24322353)
chr1 (257-303)||(24365193-24365239)
chr1 (25-77)||(24366813-24366865)
[»] scaffold0508 (1 HSPs)
scaffold0508 (24-326)||(11919-12230)
[»] chr4 (44 HSPs)
chr4 (455-596)||(49041016-49041157)
chr4 (244-305)||(45366400-45366461)
chr4 (24-104)||(7771061-7771141)
chr4 (251-305)||(45372251-45372305)
chr4 (394-441)||(48147754-48147801)
chr4 (24-105)||(7238060-7238141)
chr4 (24-104)||(7789746-7789826)
chr4 (24-80)||(7904689-7904745)
chr4 (24-96)||(7907982-7908054)
chr4 (394-441)||(48735419-48735466)
chr4 (18-104)||(7765272-7765358)
chr4 (394-443)||(45372107-45372156)
chr4 (244-297)||(48870374-48870427)
chr4 (244-297)||(48886060-48886113)
chr4 (390-447)||(48902925-48902982)
chr4 (394-443)||(49041199-49041248)
chr4 (28-104)||(7822630-7822706)
chr4 (397-441)||(7908325-7908369)
chr4 (24-84)||(48156788-48156848)
chr4 (24-84)||(48891066-48891126)
chr4 (395-438)||(7237763-7237806)
chr4 (395-438)||(7771396-7771439)
chr4 (395-438)||(7790081-7790124)
chr4 (394-441)||(45384905-45384952)
chr4 (394-441)||(50250818-50250865)
chr4 (395-441)||(7877727-7877773)
chr4 (395-441)||(48705396-48705442)
chr4 (24-114)||(48870199-48870289)
chr4 (24-114)||(48885885-48885975)
chr4 (255-305)||(49044378-49044428)
chr4 (264-305)||(37827176-37827217)
chr4 (394-443)||(48170597-48170646)
chr4 (394-439)||(48852663-48852708)
chr4 (394-439)||(48870539-48870584)
chr4 (394-439)||(48875843-48875888)
chr4 (394-439)||(48886225-48886270)
chr4 (394-439)||(48898701-48898746)
chr4 (252-305)||(48902778-48902831)
chr4 (227-303)||(7771222-7771298)
chr4 (227-303)||(7789907-7789983)
chr4 (28-108)||(7813141-7813221)
chr4 (328-372)||(45366327-45366371)
chr4 (394-438)||(49048613-49048657)
chr4 (20-84)||(50251169-50251233)
[»] chr5 (5 HSPs)
chr5 (394-441)||(29696203-29696250)
chr5 (394-446)||(179031-179083)
chr5 (464-499)||(29712421-29712456)
chr5 (394-440)||(29712504-29712550)
chr5 (251-305)||(42562513-42562567)
[»] chr8 (6 HSPs)
chr8 (24-104)||(15348519-15348599)
chr8 (394-441)||(4031938-4031985)
chr8 (394-439)||(12200304-12200349)
chr8 (394-439)||(12444732-12444777)
chr8 (24-64)||(12199964-12200004)
chr8 (24-64)||(12444392-12444432)
[»] chr3 (6 HSPs)
chr3 (18-84)||(47452268-47452334)
chr3 (394-443)||(11005988-11006037)
chr3 (394-443)||(11024563-11024612)
chr3 (390-439)||(47451946-47451995)
chr3 (263-302)||(47452092-47452131)
chr3 (394-443)||(11015551-11015600)
[»] chr6 (1 HSPs)
chr6 (394-438)||(21979678-21979722)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 204 - 634
Target Start/End: Original strand, 24352580 - 24353010
Alignment:
Q  204 tgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 303  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| |||||||||||||||||||  | |     
T  24352580 tgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatatgtt 24352679  T
Q  304 caaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggttttg 403  Q
    || | | ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  24352680 cacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttg 24352779  T
Q  404 ggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag 503  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24352780 ggtatgacgaatcaacatatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag 24352879  T
Q  504 ccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcagttat 603  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24352880 ccctacccatttgcctttttgtagtaagtcctctccctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcaattat 24352979  T
Q  604 gatacacgtgactatcttgttgttgcctttg 634  Q
    ||||||| ||| |||||||||||||||||||    
T  24352980 gatacacatgaatatcttgttgttgcctttg 24353010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 201 - 634
Target Start/End: Original strand, 24340212 - 24340645
Alignment:
Q  201 cgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataatt 300  Q
    |||||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| |||||||||||||||||||  |    
T  24340212 cgatgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatat 24340311  T
Q  301 ttgcaaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggtt 400  Q
     | || | | ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| ||||||||||||    
T  24340312 gttcacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggtt 24340411  T
Q  401 ttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt 500  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340412 ttgggtatgacgaatcaacatatgattacttggtggtttcagtttaatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt 24340511  T
Q  501 gagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcagt 600  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24340512 gagccctacccatttgcctttttgtagtaagtcctctccctttgtttatcccttagtagagtcggtcttcaacggagctattcactggttggctttcaat 24340611  T
Q  601 tatgatacacgtgactatcttgttgttgcctttg 634  Q
    |||||||||| ||| |||||||||||||||||||    
T  24340612 tatgatacacatgaatatcttgttgttgcctttg 24340645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 394 - 633
Target Start/End: Original strand, 24367144 - 24367395
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacg 493  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  | || |||| ||||||||||||||||||||||||||||||||||||||| |    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgattacttggggattttctcattgagagctaatgcgtggaatg 24367243  T
Q  494 aaattgtgagccctacccatttgcctttttgtagtaag------------tcctcttcctttgtttatcccttagtagagtcggtcttcaacggagctat 581  Q
    ||| |||| |  ||||||||||| ||||||||||| ||            ||||||||| ||||||||||| |||||||| |  ||||  | || |||||    
T  24367244 aaactgtgggtactacccatttggctttttgtagtgaggtttctccctcttcctcttccattgtttatcccgtagtagagacactctttcatggggctat 24367343  T
Q  582 tcactggttggctttcagttatgatacacgtgactatcttgttgttgccttt 633  Q
    |||||||||| ||||  ||||||||| ||||| | || || |||||||||||    
T  24367344 tcactggttgacttttcgttatgatatacgtgtcaatgttattgttgccttt 24367395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 466 - 634
Target Start/End: Original strand, 24322835 - 24323003
Alignment:
Q  466 ttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgccttttt-gtagtaagtcctcttcctttgtttatcccttagtagagtcg 564  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||| |  ||| ||||   |||| |  | |||||||||    
T  24322835 ttctctttgagagctaatgcgtggaacgaaattgtgggtcctacacatttgccttttttgtagtaactt-tctcccttcacttattctgtggtagagtcg 24322933  T
Q  565 gtcttcaacggagctattcactggttggctttcagttatgatacacgtgactatcttgttgttgcctttg 634  Q
    ||||||||||| |||||||||||||||||||| |||  |||| ||| ||| ||||||  |||||||||||    
T  24322934 gtcttcaacggggctattcactggttggctttaagtcctgatgcacatgagtatcttactgttgcctttg 24323003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 24309834 - 24309929
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtaggattctgttcttaac 119  Q
    ||||| |||||||||||||||||| |||  ||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||    
T  24309834 taagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttacttcttcaacacacacccgtagaattctcttcataac 24309929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 24415834 - 24415898
Alignment:
Q  456 cttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctt 520  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24415834 cttgaggattttctcattgagagctaatgtgtggaacgaaattgtgagtcctacccatttgcctt 24415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 24340071 - 24340157
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtaggattct 110  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||| ||||  || |||||||||||| ||| |||||    
T  24340071 taagtcatggttttcacttatctctgataatcactttgcaaattcacactttcaagttactgctgcaacacacactcttagaattct 24340157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 439
Target Start/End: Original strand, 24310022 - 24310213
Alignment:
Q  251 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatatatggaatccatccaccggatttta 350  Q
    ||||| ||||||||||| || ||| ||||||||||||||| |||||| | ||| |   |  ||||||   |||  |||||||||||||||||||| || |    
T  24310022 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 24310121  T
Q  351 tagaaaaatacctttccctcct---agtgtttcacatttagttttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    |||| |||||||||  ||||||   | |  ||||| ||||  ||| ||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  24310122 tagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttt 24310213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 24369476 - 24369526
Alignment:
Q  393 ttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24369476 ttatggttttggctatgacgagtcaacagatgattacctggtggtttcagt 24369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 461 - 594
Target Start/End: Original strand, 24310265 - 24310398
Alignment:
Q  461 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtaga 560  Q
    ||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| |||| ||   ||| | |||| |||| |  | |||||    
T  24310265 ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagtgagctttctccttttgcttattctgtggtaga 24310364  T
Q  561 gtcggtcttcaacggagctattcactggttggct 594  Q
    ||| |||||||| || ||||||||||||||||||    
T  24310365 gtccgtcttcaatggggctattcactggttggct 24310398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 469 - 592
Target Start/End: Original strand, 24369581 - 24369704
Alignment:
Q  469 tcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatcccttagtagagtcggtct 568  Q
    |||||| ||||||||| |||||| |||||||||    |||||| ||||||||||| | ||  |  ||||||||||| || |||| ||||||| ||| | |    
T  24369581 tcattgtgagctaatgtgtggaaggaaattgtggatactacccgtttgcctttttatggtcgggtctcttcctttgattgtcccgtagtagaatcgcttt 24369680  T
Q  569 tcaacggagctattcactggttgg 592  Q
    |||| || ||||||||||||||||    
T  24369681 tcaatggggctattcactggttgg 24369704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 24322273 - 24322353
Alignment:
Q  217 cctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 297  Q
    ||||||| |||| |||||| ||||   |||||  ||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  24322273 cctgttctactggaccctaattttttgcttcctaaatcttattttgatcttaaagttagaggttcatgtagagggtatata 24322353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 24365193 - 24365239
Alignment:
Q  257 attttgatcttcaaattaaaggttcatgtagagggtttataattttg 303  Q
    ||||||||||| |||||| |||||||||||||||||| ||| |||||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttg 24365239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 24366813 - 24366865
Alignment:
Q  25 aagtcatggttttctcttatctcagataatcactttgcaatttcacattttca 77  Q
    |||||||||||||||||||||||| ||  | ||||||||| |||||| |||||    
T  24366813 aagtcatggttttctcttatctcaaatccttactttgcaaattcacagtttca 24366865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 24 - 326
Target Start/End: Original strand, 11919 - 12230
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtaggattctgttcttaaccgta 123  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  11919 taagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttacttcttcaacacacactcgtaggattctgttcttaacagta 12018  T
Q  124 aattcacagtttcaacttaccactccaatacac---------actcctgaatttcgatctatagatttaccgtcattgtttacccacgatgattataacg 214  Q
     ||||||||||||||||| || |||||| || |         |||||||||||||||||||||||||||| |||||||||||   ||||||||||| | |    
T  12019 cattcacagtttcaactttcctctccaacactctttaccactactcctgaatttcgatctatagatttactgtcattgtttagggacgatgattattatg 12118  T
Q  215 aacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttc 314  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| | | ||||    
T  12119 aacctgttccgctgaaccctagttttccacttccggaatctcattttgatcttcaaattaaaggttcatgtagaaggtttatatttttgcacacttgttc 12218  T
Q  315 aaaagcttatat 326  Q
    ||| ||||||||    
T  12219 aaaggcttatat 12230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 455 - 596
Target Start/End: Complemental strand, 49041157 - 49041016
Alignment:
Q  455 acttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaagtcctcttcctttgtttatccctt 554  Q
    |||||| |||||||||||||| |||||||| |||||| ||||||||| |  ||| ||||| ||||||||||||||||  |  ||||| |  ||||||| |    
T  49041157 acttggagattttctcattgaaagctaatgtgtggaaggaaattgtgggtactatccattggcctttttgtagtaaggtcgtttcctcttattatcccat 49041058  T
Q  555 agtagagtcggtcttcaacggagctattcactggttggcttt 596  Q
     ||||| ||| |||||||||| |||||||| |||||||||||    
T  49041057 ggtagactcgttcttcaacggggctattcattggttggcttt 49041016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 45366461 - 45366400
Alignment:
Q  244 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 305  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  45366461 cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 45366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 7771061 - 7771141
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtag 104  Q
    |||||| ||||||||||||||||| |||  |||||||| || |||||||||||||||| ||||| ||||||||||| ||||    
T  7771061 taagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaacttgcctctgcaacacacacttgtag 7771141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 45372305 - 45372251
Alignment:
Q  251 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 305  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  45372305 aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 48147801 - 48147754
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttca 48147754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 7238141 - 7238060
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtagg 105  Q
    |||||| ||||||||||||||||| ||   ||||||||||| ||||||||| |||| ||||||| |||| || |||||||||    
T  7238141 taagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaacatacctctgcaacgcatactcgtagg 7238060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 7789746 - 7789826
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtag 104  Q
    |||||| ||||||||| ||||||| |||  |||||||| || |||||||||||||||| ||||  ||||||||||| ||||    
T  7789746 taagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaacttgcctccgcaacacacacttgtag 7789826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 7904689 - 7904745
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaact 80  Q
    ||||| |||||||||||||||||| |||  ||||||||||| |||||||||||||||    
T  7904689 taagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 7907982 - 7908054
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacac 96  Q
    |||||||||||||||||||||||| | |   || ||||||| |||||||||||||||||||||| ||| ||||    
T  7907982 taagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttacctctgcaaaacac 7908054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 48735466 - 48735419
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggtttca 48735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 7765272 - 7765358
Alignment:
Q  18 catttctaagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtag 104  Q
    ||||| ||||| |||||||||| ||||||| |||  ||||||||||| ||||||||| ||||||| |  | ||| ||||||||||||    
T  7765272 catttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaacttaaccatgcaaaacacactcgtag 7765358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 45372156 - 45372107
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||||||||    
T  45372156 tatggatttgggtatgatgagttaagagatgattacttggtggtttcagt 45372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 48870374 - 48870427
Alignment:
Q  244 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 297  Q
    ||||| |||||||||| |||| || |||||||||||||||||||||| ||||||    
T  48870374 cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata 48870427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 48886060 - 48886113
Alignment:
Q  244 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 297  Q
    ||||| |||||||||| |||| || |||||||||||||||||||||| ||||||    
T  48886060 cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata 48886113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 48902925 - 48902982
Alignment:
Q  390 tttttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttca 447  Q
    |||||||||||||||||||||| | |||| ||||||||||||| |||| ||| |||||    
T  48902925 tttttatggttttgggtatgaccactcaagagatgattacttgatggtatcaatttca 48902982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 49041248 - 49041199
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagt 49041199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 7822630 - 7822706
Alignment:
Q  28 tcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtag 104  Q
    |||||||||||||||||||| |||   |||||||||| |||||| |||||| | ||| || ||||||| ||||||||    
T  7822630 tcatggttttctcttatctctgatccccactttgcaaattcacaatttcaattcaccactgcaacacatactcgtag 7822706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 7908325 - 7908369
Alignment:
Q  397 ggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttca 7908369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 48156848 - 48156788
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacc 84  Q
    |||||| ||||||||||||||||| |||| ||| ||||||| ||| ||||||||| |||||    
T  48156848 taagtcttggttttctcttatctccgatactcattttgcaaattctcattttcaaattacc 48156788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 48891066 - 48891126
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacc 84  Q
    |||||| |||||||||||| ||||||||  ||| ||||||| ||| |||||||||||||||    
T  48891066 taagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 48891126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  395 atggttttgggtatgacgagtcaacagatgattacttggtggtt 438  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  395 atggttttgggtatgacgagtcaacagatgattacttggtggtt 438  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  395 atggttttgggtatgacgagtcaacagatgattacttggtggtt 438  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 45384952 - 45384905
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtttca 45384905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttca 50250818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 7877727 - 7877773
Alignment:
Q  395 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttca 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 48705442 - 48705396
Alignment:
Q  395 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttca 48705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 48870199 - 48870289
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtaggattctgttc 114  Q
    |||||| ||||||| ||||||||| |||   |  ||||||| |||||||||||| || ||  |  ||||||||||||||||||||||||||    
T  48870199 taagtcttggttttttcttatctccgatcccctttttgcaaattcacattttcatctcacagccgcaacacacactcgtaggattctgttc 48870289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 48885885 - 48885975
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtaggattctgttc 114  Q
    |||||| ||||||| ||||||||| |||   |  ||||||| |||||||||||| || ||  |  ||||||||||||||||||||||||||    
T  48885885 taagtcttggttttttcttatctccgatcccctttttgcaaattcacattttcatctcacagccgcaacacacactcgtaggattctgttc 48885975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 49044428 - 49044378
Alignment:
Q  255 ttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 305  Q
    ||||||| || |||||| |||| |||||||||||||||||||| |||||||    
T  49044428 ttatttttatattcaaactaaatgttcatgtagagggtttatatttttgca 49044378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 37827217 - 37827176
Alignment:
Q  264 tcttcaaattaaaggttcatgtagagggtttataattttgca 305  Q
    ||||||||||||||||||| ||||||||||| || |||||||    
T  37827217 tcttcaaattaaaggttcaggtagagggtttgtatttttgca 37827176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 48170646 - 48170597
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    |||||||||||||||||  ||| || |||||||||||| |||||||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagt 48170597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 48852663 - 48852708
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttt 48852708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 48870539 - 48870584
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48870584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 48875843 - 48875888
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    |||||||||||||||||  ||| | |||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggttt 48875888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 48886225 - 48886270
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48886270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 48898701 - 48898746
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48898746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 48902778 - 48902831
Alignment:
Q  252 atcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 305  Q
    |||||||||||||||  |||||| ||||||||| ||||||||| || |||||||    
T  48902778 atcttattttgatctaaaaattataggttcatgcagagggtttgtacttttgca 48902831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 7771222 - 7771298
Alignment:
Q  227 tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 303  Q
    |||||| || |||| | ||||| ||||||||||||  | || |||||| |||||| ||||||||||||||| |||||    
T  7771222 tgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 7789907 - 7789983
Alignment:
Q  227 tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 303  Q
    |||||| || |||| | ||||| ||||||||||||  | || |||||| |||||| ||||||||||||||| |||||    
T  7789907 tgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggtttatacttttg 7789983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 7813141 - 7813221
Alignment:
Q  28 tcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtaggatt 108  Q
    |||||||||||||||||||| ||    ||||||||||  ||||| |||||| | ||| || ||||||| ||||||||||||    
T  7813141 tcatggttttctcttatctctgaaccccactttgcaaagtcacaatttcaattcaccactgcaacacatactcgtaggatt 7813221  T

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Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 45366371 - 45366327
Alignment:
Q  328 tggaatccatccaccggattttatagaaaaatacctttccctcct 372  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||||    
T  45366371 tggaatccatccactggatttcataaaaaaatacctttgcctcct 45366327  T

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Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 438  Q
    ||||||||||||||||||   |||||||||||||| |||||||||    
T  49048657 tatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

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Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 50251233 - 50251169
Alignment:
Q  20 tttctaagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacc 84  Q
    |||||||||| ||||||||||||||||| |||   |||| ||||| ||  |||||||||||||||    
T  50251233 tttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 50251169  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Original strand, 29696203 - 29696250
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttca 29696250  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 179031 - 179083
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttc 446  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||    
T  179031 tatggttttgggtatgaggagtcaacagatgattacttgttggtgtcaatttc 179083  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 499
Target Start/End: Complemental strand, 29712456 - 29712421
Alignment:
Q  464 ttttctcattgagagctaatgcgtggaacgaaattg 499  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29712456 ttttctcattgagagctgatgcgtggaacgaaattg 29712421  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 29712550 - 29712504
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttc 440  Q
    |||||||||||||||||||||||||  ||||||||||| ||| ||||    
T  29712550 tatggttttgggtatgacgagtcaagggatgattacttcgtgctttc 29712504  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 42562567 - 42562513
Alignment:
Q  251 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 305  Q
    |||||||||| ||| ||  |||||||||||| ||||||||||||||| |||||||    
T  42562567 aatcttatttcgatattggaattaaaggttcgtgtagagggtttatacttttgca 42562513  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 15348519 - 15348599
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacctcttcaacacacactcgtag 104  Q
    |||||| ||||||||||||||||| |||  | |||| |||| ||||||||||||| ||||| |  ||||||||||||||||    
T  15348519 taagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtag 15348599  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 4031985 - 4031938
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 441  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||||    
T  4031985 tatggttttgggtatgaccagtcaacaaatgactacctggtggtttca 4031938  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 12200304 - 12200349
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 12444732 - 12444777
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 12199964 - 12200004
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaa 64  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  12199964 taagtcatggttttctcttatctctgatcctcactttgcaa 12200004  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 12444392 - 12444432
Alignment:
Q  24 taagtcatggttttctcttatctcagataatcactttgcaa 64  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  12444392 taagtcatggttttctcttatctctgatcctcactttgcaa 12444432  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 47452334 - 47452268
Alignment:
Q  18 catttctaagtcatggttttctcttatctcagataatcactttgcaatttcacattttcaacttacc 84  Q
    |||||||||||||||||||||||||||||| |||  || ||||||||   |||||||| ||||||||    
T  47452334 catttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattttgaacttacc 47452268  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 11006037 - 11005988
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11005988  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 11024612 - 11024563
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 47451995 - 47451946
Alignment:
Q  390 tttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 439  Q
    ||||||| | |||||||||||||||| ||||||||||||||| |||||||    
T  47451995 tttttattggtttgggtatgacgagttaacagatgattacttagtggttt 47451946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 47452131 - 47452092
Alignment:
Q  263 atcttcaaattaaaggttcatgtagagggtttataatttt 302  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  47452131 atcttgaaattaaaggttcatgtagagggtttatactttt 47452092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 11015600 - 11015551
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 443  Q
    |||||||||||||||||| | | || |||||||||||||||||| |||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggtatcagt 11015551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 21979722 - 21979678
Alignment:
Q  394 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 438  Q
    ||||||||||| |||||| |||||| | |||||||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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