View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_110 (Length: 250)
Name: NF3002_low_110
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30836608 - 30836370
Alignment:
| Q |
1 |
acaccattacggcaaagaacagctcttgaatcaccacagtttgaaacgataattttatttggagtaacaacagctacaacagctgtggatccaacagcat |
100 |
Q |
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| T |
30836608 |
acaccattacggcaaagaacagctcttgaatcaccacagtttgaaacgataattttgtttggagtaacaacagctacaacagctgtggatccaacagcat |
30836509 |
T |
|
| Q |
101 |
cacagtgaggagtttgaagctcacatctacaagtaacactttgactactgctgttccatctttgaacttcatcatccatgcgagcaaagccttgttgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30836508 |
cacagtgaggagtttgaagctcacatctacaagtaacactttgactactgctgttccatctttgaacttcatcatccatgcgagcaaagccttgttgcat |
30836409 |
T |
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| Q |
201 |
ggtgttgttccattctaaattctcttgtgcttcgttcat |
239 |
Q |
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| T |
30836408 |
ggtgttgttccattctaaattctcttgtccttcgttcat |
30836370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 34536677 - 34536562
Alignment:
| Q |
10 |
cggcaaagaacagctcttgaatcaccacagtttgaaacgataattttatttggagtaacaacagctacaacagctgtggatccaacagcatcacagtgag |
109 |
Q |
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| T |
34536677 |
cggcaaaggacggcccgtgaatcaccacaattcgagacaatgattttctccggcgtaacaacggcaacaacagcagtagaaccaacagcatcacagtgag |
34536578 |
T |
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| Q |
110 |
gagtttgaagctcaca |
125 |
Q |
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| T |
34536577 |
gagtttgaagctcaca |
34536562 |
T |
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