View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_111 (Length: 250)

Name: NF3002_low_111
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_111
NF3002_low_111
[»] chr1 (2 HSPs)
chr1 (1-223)||(7098679-7098901)
chr1 (37-219)||(7582381-7582563)
[»] chr4 (2 HSPs)
chr4 (22-219)||(13615872-13616067)
chr4 (60-167)||(20297276-20297383)
[»] chr5 (11 HSPs)
chr5 (22-219)||(17982186-17982383)
chr5 (51-172)||(30399383-30399504)
chr5 (42-167)||(30243027-30243152)
chr5 (42-167)||(30748966-30749091)
chr5 (33-164)||(30059683-30059814)
chr5 (58-104)||(30522302-30522348)
chr5 (58-104)||(30562642-30562688)
chr5 (27-165)||(30714074-30714212)
chr5 (58-159)||(17418840-17418941)
chr5 (51-102)||(30474760-30474811)
chr5 (42-167)||(30677823-30677948)
[»] chr7 (1 HSPs)
chr7 (61-172)||(26706650-26706761)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7098901 - 7098679
Alignment:
Q  1 catggaagggtggtgatacacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098901 catggaagggtggtgatacacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaat 7098802  T
Q  101 acattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098801 acattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttca 7098702  T
Q  201 tcacttggtaaactaccatatct 223  Q
    |||||||||||||||||||||||    
T  7098701 tcacttggtaaactaccatatct 7098679  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 7582381 - 7582563
Alignment:
Q  37 ttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggat 136  Q
    |||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |||||||| |||||||||||    
T  7582381 ttattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggat 7582480  T
Q  137 cagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccat 219  Q
    |||||||||| |||||||||||||||||||| ||     |||||  || ||||||||||||||||||||||||||||||||||    
T  7582481 cagaactcttggtaatttagttactcttgaaattaagggttgcatgcactgtgaacggttttcatcacttggtaaactaccat 7582563  T

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Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 13616067 - 13615872
Alignment:
Q  22 ctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatg 121  Q
    |||||||||| ||| |||| ||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||| |||||||| ||||||||||    
T  13616067 ctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttca-cctc-tccaaatctcaagagcttgaaaatatattcttacaaaggattatg 13615970  T
Q  122 ctttccaagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccat 219  Q
    |||  |||||||||||||||||| ||||||||||||||||||| |||||     ||||   ||||| |||||||||||||||||||||||||||||||    
T  13615969 cttctcaagttggatcagaactcatagtaatttagttactcttaaagttaaggattgcgtgcattgagaacggttttcatcacttggtaaactaccat 13615872  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 20297276 - 20297383
Alignment:
Q  60 gaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagtta 159  Q
    |||||||||||||||||  ||||||||||| ||||| ||||| |||  ||  | ||||| || || ||||||||||| |  | ||||||||||||||||     
T  20297276 gaagtgcttcaacctcagtcaaatctcaagtgcttggaaataaattgctatgatggattgtggttaccaagttggataattattcttagtaatttagttt 20297375  T
Q  160 ctcttgaa 167  Q
    || |||||    
T  20297376 cttttgaa 20297383  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 17982383 - 17982186
Alignment:
Q  22 ctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatg 121  Q
    |||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||| | |||||| ||| ||||||||||| ||| |||||||||||||||    
T  17982383 ctgtcaagacccctattattagtgatgatcgtgtatttgaagtgcttcaacctcacagaaatcttaagggcttgaaaatatattattaccaaggattatg 17982284  T
Q  122 ctttccaagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccat 219  Q
    ||| ||||||||||||||||||||||| |||||| ||||||||   |||     |||||  | |||||||||||||||||||||||||||||||||||    
T  17982283 cttcccaagttggatcagaactcttagcaatttacttactcttattgttaaggattgcatgctttgtgaacggttttcatcacttggtaaactaccat 17982186  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 30399504 - 30399383
Alignment:
Q  51 caagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagta 150  Q
    |||||| | |||||||||||||||||  ||||||||||| ||||||||||| |||  ||  | |||||||  || ||||||||||| |  | ||||||||    
T  30399504 caagtactcgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggataattattcttagta 30399405  T
Q  151 atttagttactcttgaagttgg 172  Q
    |||||||| |||||||| ||||    
T  30399404 atttagtttctcttgaacttgg 30399383  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 30243027 - 30243152
Alignment:
Q  42 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 141  Q
    |||| ||| |||||| |||||||||||||||||||  ||||||||||| |||||||||||  ||  ||  | ||||||| ||| ||||||||||| |       
T  30243027 agtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataagtttctatgagggattatccttaccaagttggataattc 30243126  T
Q  142 ctcttagtaatttagttactcttgaa 167  Q
     ||||||||||||| || ||||||||    
T  30243127 ttcttagtaatttaatttctcttgaa 30243152  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 30749091 - 30748966
Alignment:
Q  42 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 141  Q
    |||| ||| |||||| |||||||||||||||||||  ||||||||||  |||||| |||| |||  ||  |||||||||  || ||||||||||| |  |    
T  30749091 agtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataatta 30748992  T
Q  142 ctcttagtaatttagttactcttgaa 167  Q
     ||||||||||||| || ||||||||    
T  30748991 ttcttagtaatttaatttctcttgaa 30748966  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 30059814 - 30059683
Alignment:
Q  33 cctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagtt 132  Q
    |||||| | |||| ||| |||||| ||||||| |||||||||||  ||||||||||  |||||||||||  ||  ||  | ||||||| ||| |||||||    
T  30059814 cctgttgttagtgttgagcaagtacttgaagttcttcaacctcactcaaatctcaactgcttgaaaataagtttctatgagggattatccttgccaagtt 30059715  T
Q  133 ggatcagaactcttagtaatttagttactctt 164  Q
    |||| |  | |||||||||||||||| |||||    
T  30059714 ggataattattcttagtaatttagtttctctt 30059683  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 30522302 - 30522348
Alignment:
Q  58 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacat 104  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||    
T  30522302 ttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacat 30522348  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 30562642 - 30562688
Alignment:
Q  58 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacat 104  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||    
T  30562642 ttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacat 30562688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 30714074 - 30714212
Alignment:
Q  27 aagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttc 126  Q
    ||||| |||||| | |||| ||| |||||| | |||| ||||||||||||  ||||||||||  |||||| |||| |||  ||  |||||||||  || |    
T  30714074 aagacccctgttgttagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattac 30714173  T
Q  127 caagttggatcagaactcttagtaatttagttactcttg 165  Q
    |||||||||| |  | |||||||||||||||| ||||||    
T  30714174 caagttggataattattcttagtaatttagtttctcttg 30714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 17418840 - 17418941
Alignment:
Q  58 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagt 157  Q
    |||||||||||||||||||  ||||||||||| |||||||||||  ||  ||  | ||| |||  || ||||||||||| || | |||||||||||||||    
T  17418840 ttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataacttactatgatggaatattgttaccaagttggataagtattcttagtaatttagt 17418939  T
Q  158 ta 159  Q
    ||    
T  17418940 ta 17418941  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 30474811 - 30474760
Alignment:
Q  51 caagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatac 102  Q
    |||||| ||||| |||||||||||||  ||||||||||||| ||||||||||    
T  30474811 caagtacttgaaatgcttcaacctcactcaaatctcaagaggttgaaaatac 30474760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 30677823 - 30677948
Alignment:
Q  42 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 141  Q
    |||| ||| |||||| ||||||||||| |||||||  ||||||||||  |||||| |||| |||  ||  || ||||||  || ||||||||||| |  |    
T  30677823 agtgctgagcaagtacttgaagtgcttaaacctcactcaaatctcaaatgcttgacaataaattactatgaaagattatcgttaccaagttggataatta 30677922  T
Q  142 ctcttagtaatttagttactcttgaa 167  Q
     ||||||||||||| || ||||||||    
T  30677923 ttcttagtaatttaatttctcttgaa 30677948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 26706761 - 26706650
Alignment:
Q  61 aagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagttac 160  Q
    ||||||||||||||||  ||||||||||| ||||| ||||| | |  ||| | |||||||  || ||||||||| | || | |||||||||||||||| |    
T  26706761 aagtgcttcaacctcactcaaatctcaagtgcttggaaataaagtactacgacggattatcattaccaagttgggtaagtattcttagtaatttagtttc 26706662  T
Q  161 tcttgaagttgg 172  Q
    ||||||| ||||    
T  26706661 tcttgaacttgg 26706650  T

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