View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_114 (Length: 249)

Name: NF3002_low_114
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_114
NF3002_low_114
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-238)||(35593-35830)
[»] chr7 (2 HSPs)
chr7 (22-235)||(3338659-3338872)
chr7 (38-87)||(20012217-20012266)
[»] chr6 (10 HSPs)
chr6 (22-235)||(2951420-2951633)
chr6 (22-229)||(2934083-2934290)
chr6 (22-229)||(2926644-2926851)
chr6 (22-201)||(3004168-3004347)
chr6 (23-191)||(2659391-2659559)
chr6 (35-229)||(2963966-2964166)
chr6 (44-235)||(2972476-2972669)
chr6 (36-210)||(2997798-2997972)
chr6 (22-193)||(2982386-2982563)
chr6 (139-229)||(2929370-2929460)
[»] chr3 (1 HSPs)
chr3 (35-149)||(49612973-49613093)


Alignment Details
Target: scaffold0024 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35593 - 35830
Alignment:
Q  1 atatgtcgttgatcaagatgcttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35593 atatgtcgctgatcaagatgcttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgtgacgttccatgtttttgagctgggggtg 35692  T
Q  101 accgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35693 accgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcg 35792  T
Q  201 gttgaaggtgcatctgctgtgtggagcatcacattcat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35793 gttgaaggtgcatctgctgtgtggagcatcacattcat 35830  T

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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 3338872 - 3338659
Alignment:
Q  22 ttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaat 121  Q
    ||||| |||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||  |||  | |||||||||||||||||||||    
T  3338872 ttaaacatgcctcggttcgttggagaaaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcgggttttaccgtggtgaaaggggccaat 3338773  T
Q  122 ggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtg 221  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  | ||||||||||||||  |||| ||||    
T  3338772 ggaaacgaacttaggggtgtatgcgtcttcattgtgtttgcgaataacagagggtactttgtagatgcaacagtcatcggttgaaggtggctctgatgtg 3338673  T
Q  222 tggagcatcacatt 235  Q
    | ||||||| ||||    
T  3338672 tcgagcatcgcatt 3338659  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 20012266 - 20012217
Alignment:
Q  38 tcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttt 87  Q
    ||||||||||||  ||||||||||| |||||||| ||| |||||||||||    
T  20012266 tcgttggagaaatgctttgaagtaactgagtttgtgacattccatgtttt 20012217  T

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Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 2951633 - 2951420
Alignment:
Q  22 ttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaat 121  Q
    ||||| |||| ||||||| |||||||||||| |||||||||||||||||  ||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  2951633 ttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaat 2951534  T
Q  122 ggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtg 221  Q
    ||||||||  || ||||||||||||||||  |||||  ||||||||||| |||||||||||||||||||||  | ||| |||||||||| || |||||||    
T  2951533 ggaaacgaccttgggggtgtatgcgtctttgttgtgcctgcgaataacataggggaccttgtagatgcaacactcatctgttgaaggtggatgtgctgtg 2951434  T
Q  222 tggagcatcacatt 235  Q
    ||||||||| ||||    
T  2951433 tggagcatcgcatt 2951420  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 2934290 - 2934083
Alignment:
Q  22 ttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaat 121  Q
    ||||| |||| ||||||| |||||||||||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  2934290 ttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccgtggtgaaaggggccaat 2934191  T
Q  122 ggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtg 221  Q
    |||||||| | | ||||||||||||||||  |||||| ||||||||||| | |||||||| ||||||||||  | ||||||||||||||  |||||| ||    
T  2934190 ggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataagggaccttatagatgcaacagtcatcggttgaaggtgactctgctttg 2934091  T
Q  222 tggagcat 229  Q
    | ||||||    
T  2934090 tcgagcat 2934083  T

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Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 2926851 - 2926644
Alignment:
Q  22 ttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaat 121  Q
    ||||| |||| ||||||| |||||||||||| |||||||||||||||||  ||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  2926851 ttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggggttgaccgtggtgaaaggggccaat 2926752  T
Q  122 ggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtg 221  Q
     |||||||  || ||||||||||||||||  |||||| ||||||||||| |||||||||| ||||| ||||  | ||||||||||||||  |||||||||    
T  2926751 agaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttatagatacaacagtcatcggttgaaggtgactctgctgtg 2926652  T
Q  222 tggagcat 229  Q
    | ||||||    
T  2926651 ttgagcat 2926644  T

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Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 3004168 - 3004347
Alignment:
Q  22 ttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaat 121  Q
    ||||| |||| ||||||| |||||||||||| |||||||||||||||||  ||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  3004168 ttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgattttccatgttttggagctgggggtgaccgtggtgaaaggggccaat 3004267  T
Q  122 ggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcgg 201  Q
    |||||||| | | ||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||  |||||||    
T  3004268 ggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgcaacacttatcgg 3004347  T

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Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 2659391 - 2659559
Alignment:
Q  23 taaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatg 122  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  2659391 taaacatgcattggttcgttggagaaaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatg 2659490  T
Q  123 gaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaa 191  Q
    ||||||| | | ||||||||||| | ||| ||| || |||||||| |||||||||||||||||||||||    
T  2659491 gaaacgagagtgggggtgtatgctttttcgttgagtgtgcgaatagcagaggggaccttgtagatgcaa 2659559  T

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Target: chr6; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 2964166 - 2963966
Alignment:
Q  35 ggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtg------accgtggtgaaaggggccaatggaaacg 128  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||||||||| || |||||||||      |||||||||||||||||| |||||||||    
T  2964166 ggttcgttggagaaaatctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaaacg 2964067  T
Q  129 aaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtgtggagca 228  Q
    || || ||||||||||||| ||| ||| || |||||||| |||||||||||||||||||||||| || || |||||||||||  |||||||||| |||||    
T  2964066 aacttgggggtgtatgcgttttcgttgagtgtgcgaatatcagaggggaccttgtagatgcaacaatcataggttgaaggtggctctgctgtgtcgagca 2963967  T
Q  229 t 229  Q
    |    
T  2963966 t 2963966  T

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Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 235
Target Start/End: Complemental strand, 2972669 - 2972476
Alignment:
Q  44 gagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtg--t 141  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||  || || |||  |    
T  2972669 gagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtgtat 2972570  T
Q  142 atgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtgtggagcatcacatt 235  Q
    |||| ||||| ||| ||||||||||   |||||||||||||||||||||||  | | ||||||||||||  ||| |||||| ||||||||||||    
T  2972569 atgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacatt 2972476  T

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Target: chr6; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 2997798 - 2997972
Alignment:
Q  36 gttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattag 135  Q
    ||||||||||||||| ||||||||| |||||||||  || |||||||||||| |||||| || ||||| ||||||||||||||||||||||||| | | |    
T  2997798 gttcgttggagaaaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgg 2997897  T
Q  136 gggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtg 210  Q
    |||||||||||||| | ||| ||||||||||   |||||||||||||||||||||||  | | ||||||||||||    
T  2997898 gggtgtatgcgtctgcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtg 2997972  T

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Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 2982563 - 2982386
Alignment:
Q  22 ttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttgagctggggg------tgaccgtggtgaaaggg 115  Q
    |||||||||| | ||||||||| |||||| ||||||||| |||||| ||  ||||||||||||||| ||| ||| ||      |||||||||||||||||    
T  2982563 ttaaagatgcctcggttcgttgaagaaaagctttgaagtgaatgagcttctgacgttccatgttttggagatggaggcctaggtgaccgtggtgaaaggg 2982464  T
Q  116 gccaatggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacg 193  Q
    |||||||||||||| ||| ||||||||||||| ||| |||  | ||||||||||||||||||||||||||||||||||    
T  2982463 gccaatggaaacgacattgggggtgtatgcgttttcgttgactgtgcgaataacagaggggaccttgtagatgcaacg 2982386  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 2929460 - 2929370
Alignment:
Q  139 tgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtgtggagcat 229  Q
    ||||||||||||| ||| ||||||||||   |||||| ||||||||||||||||  | ||| ||||||||||  |||||||||| ||||||    
T  2929460 tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgtagatgcaacagtcatcagttgaaggtggctctgctgtgttgagcat 2929370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 49613093 - 49612973
Alignment:
Q  35 ggttcgttggagaaaatctttgaagtaaatgagtttgcgacgttccatgtttttga------gctgggggtgaccgtggtgaaaggggccaatggaaacg 128  Q
    |||||||||||||||| |||||||||||||||||||| | || |||||||||| ||      | ||| |||||| |||||| || ||||||||||||| |    
T  49613093 ggttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggaggtggtggtggcggtgactgtggtggaaagggccaatggaaatg 49612994  T
Q  129 aaattaggggtgtatgcgtct 149  Q
    |  || |||||||||||||||    
T  49612993 actttgggggtgtatgcgtct 49612973  T

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