View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_116 (Length: 248)
Name: NF3002_low_116
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_116 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 16686740 - 16686976
Alignment:
| Q |
18 |
ttaatcagttaatatagttataattagctatttgatcaatagaataaatcatttaaaactaagatcaggaaggatttacgctagcaacctttgcatatat |
117 |
Q |
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| T |
16686740 |
ttaatcagttaatatagttataattagctatttgatcaatagaataaatcatttaaaactaagataaggaaggatttacgctagcaacctttgcatatat |
16686839 |
T |
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| Q |
118 |
ggatccttctccctcagttctcatctcactcatggccacac------gtgtgtgttgagaccacaaatggattttctagtactatccatgatattaacca |
211 |
Q |
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| T |
16686840 |
ggatccttctccctcagttctcatctcactcatggccacacacacatgtgtgtgttgagaccacaaatggattttctagtactatccatggtattaacca |
16686939 |
T |
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| Q |
212 |
catccatgatcataggatgagatcatttatgagaaat |
248 |
Q |
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| T |
16686940 |
catccatgatcataggttgagatcatttatgagaaat |
16686976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 4556400 - 4556300
Alignment:
| Q |
54 |
caatagaataaatcatttaaaactaagatcaggaaggatttacgctagcaacctttgcatatatggatccttctccctcagttctcatctcactcatggc |
153 |
Q |
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| T |
4556400 |
caatggaataaatcctttgaaactaagataaggaaggattttcactagcaaccattgcatatgtggatccttctccctcagttctcatctcactcatggc |
4556301 |
T |
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| Q |
154 |
c |
154 |
Q |
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| T |
4556300 |
c |
4556300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 4607394 - 4607458
Alignment:
| Q |
55 |
aatagaataaatcatttaaaactaagatcaggaaggatttacgctagcaacctttgcatatatgg |
119 |
Q |
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| T |
4607394 |
aatagaataaatcatttaaaactaagataaggaagtattttcactagaaacctttgcatatatgg |
4607458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 4556209 - 4556135
Alignment:
| Q |
174 |
acaaatggattttctagtactatccatgatattaaccacatccatgatcataggatgagatcatttatgagaaat |
248 |
Q |
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| T |
4556209 |
acaaatgaattttctagcggtatccatgatattgaccatatccatgatcctaggttgagatcatttatgagaaat |
4556135 |
T |
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