View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_119 (Length: 247)
Name: NF3002_low_119
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_119 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 172338 - 172103
Alignment:
| Q |
12 |
atgaattataagcaaatagctcagataaagaccataaacaaagtctgacatgaatcatcacatgcaaggggtgtgtaaaggaaaagtttctagaaggaaa |
111 |
Q |
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| T |
172338 |
atgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaa |
172239 |
T |
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| Q |
112 |
atgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaatta |
211 |
Q |
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| T |
172238 |
atgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaatta |
172139 |
T |
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| Q |
212 |
agttcaaaattcaaactcatgcaaacatgttcatat |
247 |
Q |
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| T |
172138 |
agttcaaaattcaatctcatgcaaacatgttcatat |
172103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 31045049 - 31045270
Alignment:
| Q |
12 |
atgaattataagcaaatagctcagataaagaccataaacaaagtctgacatgaatcatcacatgcaaggggtgtgtaaaggaaaagtttctagaaggaaa |
111 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| | | | | | || | || ||||||| |
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| T |
31045049 |
atgaactataagcaaagagctcagataaagaccataaaca--gtctgacatgaatcatctcatgcaaggtat---tca--gcagtgtatgta-aaggaaa |
31045140 |
T |
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| Q |
112 |
atgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaatta |
211 |
Q |
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| T |
31045141 |
a-gttgctattctcctaaagcctcaccaaacgaagcttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaatta |
31045233 |
T |
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| Q |
212 |
ag-ttcaaaattcaaactcatgcaaacatgttcatat |
247 |
Q |
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| T |
31045234 |
agattcaaaatttaaactcatgcaaacatgttcatat |
31045270 |
T |
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