View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_12 (Length: 612)
Name: NF3002_low_12
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 340 - 604
Target Start/End: Original strand, 43600967 - 43601231
Alignment:
| Q |
340 |
gtgaaaacaatatgtaactgttctaatgaagttattatcggtaggaacatnnnnnnnctcatatttggtatttgttctggaaaaaatactgttagattat |
439 |
Q |
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| T |
43600967 |
gtgaaaacaatatgtaactgttctaatgaagttattatcggtaggaacataaaaaaactcatatttggtatttgttctggaaaaaatactgttagattat |
43601066 |
T |
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| Q |
440 |
tggcaggagagagggacattttaatttactctatttttattgttttgaaacgatactttttctttactcaataaaagctctttcttaattatttttacaa |
539 |
Q |
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| T |
43601067 |
tggcaggagagagggacattttaatttactctatttttattgttttgaaacgatactttttctttacttaataaaagcactttcttaattatatttacaa |
43601166 |
T |
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| Q |
540 |
atctcattcatgagaatgtaataatgtaaaatgaaatgaactatatgcgtatctttcttcttctc |
604 |
Q |
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| T |
43601167 |
atctcattcatgagaatgtaataatgtaaaatgaaatgaactatatgcgtatctttcttcttctc |
43601231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 43600745 - 43600876
Alignment:
| Q |
122 |
tcattcttttctttctctactgttgaagtgtataacannnnnnnn-gtaattaaaataagcaggcactgcggttgatcaaggaattgcttacttcctcat |
220 |
Q |
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| T |
43600745 |
tcattcttttctttctctactgttgaagtgtataacatttttttttgtaattaaaataatcaggcactgcgtttgatcaaggaattgcttacttcctcat |
43600844 |
T |
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| Q |
221 |
gctggtggctcttctgatcacatatatgttcc |
252 |
Q |
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| T |
43600845 |
gctggtggctcttctgatcacatatatgttcc |
43600876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 43600658 - 43600710
Alignment:
| Q |
32 |
cacccgcacctgcacctgctccttcttgtgatggtaattaatgcttcaaacac |
84 |
Q |
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| T |
43600658 |
cacctgcacctgctcctgctccttctagtgatggtaattaatgcttcaaacac |
43600710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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