View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_122 (Length: 246)
Name: NF3002_low_122
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_122 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2879307 - 2879062
Alignment:
| Q |
1 |
aaataccccgatttggtgagccgataaatagaccctttaaaataaattgannnnnnnatccaatcagactcgtaaatgtattctggcaaactaatattca |
100 |
Q |
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| T |
2879307 |
aaataccccgacttggtgagccgataaatagaccctttaaaataaattgatttttttatccaatcagactcgtaaatgtaatctggcaaactaatattca |
2879208 |
T |
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| Q |
101 |
atgtagtccaattaccagtcacggaggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgc |
200 |
Q |
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| T |
2879207 |
atgtcgtccaattaccagtcacggaggagaaaatgttcacatgacgaagaccctgaaaacgcacaatcttgaaaaaccaagattctgcagggtcatatgc |
2879108 |
T |
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| Q |
201 |
gagagcagcatatgaataccctccagaggtttgtcctatgggcttc |
246 |
Q |
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| T |
2879107 |
cagagcagcatatgaatacccaccagaggtttgtcctatgggcttc |
2879062 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 2090153 - 2090246
Alignment:
| Q |
124 |
gaggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgcgagagcagcatatgaat |
217 |
Q |
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| T |
2090153 |
gaggagaaaatattaatatggccatgatcctgaaaatgtacaatcttgaagaaccaagattctgaagggtcatataccagagcagcatatgaat |
2090246 |
T |
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