View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_123 (Length: 245)
Name: NF3002_low_123
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_123 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29662651 - 29662880
Alignment:
| Q |
1 |
atttctcaaaatgaagccacgcagtctcatactccaacgagcaatcctcatttgcccgctaagcgacttcgctgcaaaaaaggtgacaaaagatatgggg |
100 |
Q |
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| T |
29662651 |
atttctcaaaatgaagccacgcagtctcatactccaactagcaatcctcatttgcccgctaagcgacttcgctgcaaaaaaggtgacaaaagatatgggg |
29662750 |
T |
|
| Q |
101 |
tattttcttgtggcgacaacactggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662751 |
tattttcttgtggcgacaacactggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgacct |
29662850 |
T |
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| Q |
201 |
tcaagattttcaaggttgtccatatgaata |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29662851 |
tcaagattttcaaggttgtccatatgaata |
29662880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 33201816 - 33201613
Alignment:
| Q |
12 |
tgaagccacgcagtctcatactccaacgagcaatcctcatttgcccgctaagcgacttcgctgcaaaaaaggtgacaaaagatatggggtattttcttgt |
111 |
Q |
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|||||||| |||||||||| || ||||| ||||||||||| | | ||||||| |||||||||||||||| ||||||||| ||||| || ||||||| |
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| T |
33201816 |
tgaagccaggcagtctcatgcttcaacgggcaatcctcatccggcttttaagcgatttcgctgcaaaaaaggcgacaaaagacatgggatactttcttgc |
33201717 |
T |
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| Q |
112 |
ggcgacaacactggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttc |
211 |
Q |
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|| ||| |||||||||||||| ||||| |||||||| ||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
33201716 |
ggtgactacactggataaaataggagaggggaaagtcaggcaacatactggagatgttctgttccctgttgttttcaatgccgtgaccttcaagattttc |
33201617 |
T |
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| Q |
212 |
aagg |
215 |
Q |
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|||| |
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| T |
33201616 |
aagg |
33201613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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