View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_127 (Length: 242)
Name: NF3002_low_127
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_127 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5006273 - 5006047
Alignment:
| Q |
1 |
caagaattaataaacatgctcataactctaatcataatttaactagaaaacataattatgagcataatttgattgtgagatttgggaagaggtattcacc |
100 |
Q |
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| T |
5006273 |
caagaattaataaacatgctcataactctaatcataatttaactagaaaacataattatgagcataatttgattgtgagatttgggaagaggtattcacc |
5006174 |
T |
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| Q |
101 |
tgaggttcccaaaattgttgtaattggtgaatcccaacctgaggcaaacaagaagatgaaccccaaggagctgtaaacaaggtctcaaactttatttctt |
200 |
Q |
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| T |
5006173 |
tgaggttcccaagattgttgtaattggtgaatcccaacatgaggcaaacaagaagatgaatcccaaggagctgtaaacaaggtctcaaactttatttctt |
5006074 |
T |
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| Q |
201 |
ataagttacatgtacattttacacact |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5006073 |
ataagttacatgtacattttacacact |
5006047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 5018183 - 5018059
Alignment:
| Q |
5 |
aattaataaacatgctcataactctaatcataatttaactagaaaacataattatgagcataatttgattgtgagatttgggaagaggtattcacctgag |
104 |
Q |
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| T |
5018183 |
aattaataaacttgttgataattctaatcataatttcactagaaaccataatgatgagcataatttgattgtgaggcatggcaagatgtattaacctgag |
5018084 |
T |
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| Q |
105 |
gttcccaaaattgttgtaattggtg |
129 |
Q |
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|||| |||||||||||||||||| |
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| T |
5018083 |
cttcctgaaattgttgtaattggtg |
5018059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 5011894 - 5011810
Alignment:
| Q |
20 |
tcataactctaatcataatttaactagaaaacataattatgagcataatttgattgtgagatttgggaagaggtattcacctgag |
104 |
Q |
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|||||| || ||||||||||| || ||||| | ||| ||||||||||||||||||||||| ||| ||||||| |||||||||| |
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| T |
5011894 |
tcataattcaaatcataattttacgagaaaccgtaacaatgagcataatttgattgtgagacttgttaagaggtgttcacctgag |
5011810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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