View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_13 (Length: 607)

Name: NF3002_low_13
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_13
NF3002_low_13
[»] chr6 (5 HSPs)
chr6 (1-387)||(11947111-11947490)
chr6 (68-387)||(17716039-17716350)
chr6 (68-387)||(14667094-14667404)
chr6 (1-73)||(14666970-14667042)
chr6 (33-73)||(17715947-17715987)
[»] chr8 (6 HSPs)
chr8 (68-387)||(45349687-45349996)
chr8 (213-387)||(28245251-28245425)
chr8 (1-188)||(28245034-28245221)
chr8 (68-194)||(17630113-17630239)
chr8 (1-73)||(45349563-45349635)
chr8 (1-73)||(17629986-17630061)
[»] chr7 (1 HSPs)
chr7 (1-319)||(9238396-9238704)
[»] chr5 (6 HSPs)
chr5 (68-383)||(24046483-24046791)
chr5 (213-387)||(23758815-23758989)
chr5 (213-387)||(23824275-23824449)
chr5 (213-387)||(23758226-23758400)
chr5 (213-387)||(23823682-23823857)
chr5 (1-73)||(24046843-24046915)
[»] chr3 (8 HSPs)
chr3 (213-387)||(1658089-1658263)
chr3 (3-188)||(13851786-13851971)
chr3 (455-589)||(27832624-27832758)
chr3 (68-194)||(1658290-1658412)
chr3 (450-589)||(27827691-27827826)
chr3 (1-72)||(1658465-1658536)
chr3 (444-524)||(27845227-27845306)
chr3 (213-249)||(13851722-13851758)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 11947111 - 11947490
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11947111 tctcattccgttgagcttctcacggaactgaatctcaccgtcaagcttcacacttcaccaatcgagcttcacaaatcctttttcctctttcgctcacgca 11947210  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnn 200  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | |||| ||  ||||||||||||||  ||||          
T  11947211 ggtaacactctcgaattcttcttcggtttggcatttttcgcgcattcggttttgatttcgct-agatttcatcgcaattatcttagattcgtgctttttt 11947309  T
Q  201 nnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaa 300  Q
                ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11947310 tttttc------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaa 11947403  T
Q  301 attcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  11947404 attcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgttagatgttgccaaagaataagaaattatcct 11947490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 68 - 387
Target Start/End: Original strand, 17716039 - 17716350
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | || || ||||||||||||||||| ||    
T  17716039 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcgatttcacattttttgcgctttcggttttgatttcgcttagat 17716138  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||| ||||                  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  17716139 ttcatcgcaattatcttagatccgtgcttttattttt--------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattcta 17716230  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17716231 tgtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgcc 17716330  T
Q  368 aaagaataagaaattatcct 387  Q
    ||||||||||||||||||||    
T  17716331 aaagaataagaaattatcct 17716350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 68 - 387
Target Start/End: Original strand, 14667094 - 14667404
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||| ||    
T  14667094 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgctttcggtattgattttgcttagat 14667193  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||| ||||                  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  14667194 ttcatcgcaattatcttagatccgtgcttttttttt---------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattcta 14667284  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
     |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  14667285 cgtgtttaattttcgtttcacaatttaactcaaattcttcttattctgtttggcatttgtgatttataatttctttgaaattcatgtctttgatgttgcc 14667384  T
Q  368 aaagaataagaaattatcct 387  Q
    ||||||||| ||||||||||    
T  14667385 aaagaataacaaattatcct 14667404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14666970 - 14667042
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14666970 tctcattctgtcgagcttctcaccgaactgaatctcaccgtcgagcttcacacgtcatcgatcgagcttcaca 14667042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 17715947 - 17715987
Alignment:
Q  33 tctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17715947 tctcaccgtcgagcttcacacttcaccgatcgagcttcaca 17715987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 68 - 387
Target Start/End: Original strand, 45349687 - 45349996
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||    
T  45349687 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagat 45349786  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||| ||||                  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45349787 ttcatcgcaattatcttagatccgtgctttttttt----------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattcta 45349876  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45349877 tgtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttcttttaaattcatgtgtttgatgttgcc 45349976  T
Q  368 aaagaataagaaattatcct 387  Q
    ||||||||| ||||||||||    
T  45349977 aaagaataacaaattatcct 45349996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 28245251 - 28245425
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28245251 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 28245350  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  28245351 ctgtttggcatttgtgatttataatttctttgaaattcatatgtttgatgttgccaaagaataagaaattatcct 28245425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 28245034 - 28245221
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28245034 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcactgatcgagcttcacaaatcctttttcctctttcgctcacgca 28245133  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat 188  Q
    ||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||  ||||||||||||||    
T  28245134 ggtaaaactctcgaattcttcttcggtttcccatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagat 28245221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 17630113 - 17630239
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||| ||    
T  17630113 ttcacaaatcctttttcccctttcgctcacacaggtaacactctcgaattcttcttctttttcgcatttttcgtgctttcggttttgatttcgcttagat 17630212  T
Q  168 tttataacaattatcttagatcagtgc 194  Q
    || |   |||||||||| |||| ||||    
T  17630213 ttcaccgcaattatctttgatccgtgc 17630239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45349563 - 45349635
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45349563 tctcatgccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccaatcgagcttcaca 45349635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17629986 - 17630061
Alignment:
Q  1 tctcattccgtcgagcttctcacgg---aactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    |||||||||||| |||||||||| |   |||||||||||| |||| |||||||||||||||||||| |||||||||    
T  17629986 tctcattccgtccagcttctcaccgtctaactgaatctcaacgtcaagcttcacacttcaccgatcaagcttcaca 17630061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 9238396 - 9238704
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9238396 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcacggatagagcttcacaaatcctttttcctctttcgctcacgca 9238495  T
Q  101 ggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnn 200  Q
    ||||| |  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||  ||||||||||||||  ||||          
T  9238496 ggtaaaa--ctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagattcgtgc------ 9238587  T
Q  201 nnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaa 300  Q
                |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9238588 -ttttttttttcctgttatgaatcatct-tttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaa 9238685  T
Q  301 attcttcttgttctgtttg 319  Q
    |||||||||||||||||||    
T  9238686 attcttcttgttctgtttg 9238704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 68 - 383
Target Start/End: Complemental strand, 24046791 - 24046483
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  || || | |||| |||||||||| ||    
T  24046791 ttcataaatcctttttcctctttcgctcacgcaggtaacactctcgaattctttttcggtttcgcatttttcacgccttcgttttttatttcgcttagat 24046692  T
Q  168 tttataacaattatcttagatcagtgcnnnnnnnnnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattcta 267  Q
    || ||  ||||||||||||||  ||||                  | ||||||||||||||||||| |||||||||||||| ||||||||||||||  ||    
T  24046691 ttcatcgcaattatcttagattcgtgcttttttttttt-------cagttatgaatcatctatttcgttcacattgtttgatttttgttttgaaatgtta 24046599  T
Q  268 tgtgtttgattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgcc 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24046598 tgtgtttaattttcgtttcacaatttaactcaaattcttcttgttctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgcc 24046499  T
Q  368 aaagaataagaaatta 383  Q
    ||||||||||||||||    
T  24046498 aaagaataagaaatta 24046483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 23758815 - 23758989
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23758815 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 23758914  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23758915 ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 23824275 - 23824449
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23824275 ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 23824374  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23824375 ctgttcggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23824449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 23758226 - 23758400
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23758226 ctgttatgaatcatctatttcgttcacattgtttaattttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgtt 23758325  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23758326 ctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23758400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 213 - 387
Target Start/End: Original strand, 23823682 - 23823857
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgtttt-gaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgt 311  Q
    ||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  23823682 ctgttatgaatcatctatttcgttcacattgtttaatttttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgt 23823781  T
Q  312 tctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23823782 tctgtttggcatttgtgatttataatttatttgaaattcatgtgtttgatgttgccaaagaataagaaattgtcct 23823857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24046915 - 24046843
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcaca 73  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24046915 tctcattccgtcgagcttctcaccgaactgaatctcaccatcgagcttcacacttcaccgatcgagcttcaca 24046843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 213 - 387
Target Start/End: Complemental strand, 1658263 - 1658089
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt 312  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1658263 ctgttatgagtcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt 1658164  T
Q  313 ctgtttggcatttgtgatttataatttctttaaaattcatgtgtttgatgttgccaaagaataagaaattatcct 387  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1658163 ctgtttggcatttgtgatttataatttctttgaaattcatgtgtttgatgttgccaaagaataagaaattatcct 1658089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 13851971 - 13851786
Alignment:
Q  3 tcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgcagg 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851971 tcattccgtcgagcttctcacggaactgaatctcaccgccgagcttcacacttcaccgatcgagcttcacaaatcctttttcctctttcgctcacgcagg 13851872  T
Q  103 taacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat 188  Q
    |||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||| |||| || |||||||||||||||    
T  13851871 taacactctcgaattcttcttcggtttcacatttttcgcgcattcagttttgatttcgcttagatttcatcacaattatcttagat 13851786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 455 - 589
Target Start/End: Original strand, 27832624 - 27832758
Alignment:
Q  455 gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832624 gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct 27832723  T
Q  555 ctttgatctttgacttgatttgagggcctggtaac 589  Q
    |||||||||||||||||||||||||||||||||||    
T  27832724 ctttgatctttgacttgatttgagggcctggtaac 27832758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 1658412 - 1658290
Alignment:
Q  68 ttcacaaatcctttttcctctttcgctcacgcaggtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaat 167  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||    
T  1658412 ttcacaaatcctttttcctctttcgctcaagcaggtaaca--ctcgaattcttcttcggtttcgcatttttcgcgcattt--ttttgatttcgcttagat 1658317  T
Q  168 tttataacaattatcttagatcagtgc 194  Q
    || ||  ||||||||||||||| ||||    
T  1658316 ttcatcgcaattatcttagatccgtgc 1658290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 589
Target Start/End: Original strand, 27827691 - 27827826
Alignment:
Q  450 taaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtct 549  Q
    ||||| ||||||||||||||||||||||| ||||||   ||  |||||||||| |||||||||||||||||||||| |||||    ||||||||||||||    
T  27827691 taaacaaattcgtgcacaataagccgatggtctggaattaag-aatgaaggaatcattgctgtgtgcacgaaaattaaatttt---aggtccgcatgtct 27827786  T
Q  550 gctctctttgatctttgacttgatttgagggcctggtaac 589  Q
    || |||| |||||||||| ||||||| |||||||||||||    
T  27827787 gccctctatgatctttgatttgattttagggcctggtaac 27827826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1658536 - 1658465
Alignment:
Q  1 tctcattccgtcgagcttctcacggaactgaatctcaccgtcgagcttcacacttcaccgatcgagcttcac 72  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1658536 tctcattctgtcgagcttctcacggaactgaatctcaccgtcgagcttcatacttcaccgatcgagcttcac 1658465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 524
Target Start/End: Original strand, 27845227 - 27845306
Alignment:
Q  444 gaattataaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaat 524  Q
    |||||||||| ||||  |||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  27845227 gaattataaatgaatatgtgcacaataagtcgatgctctgaat-aaaacaatgaaggaagcattgttgtgtgcacgaaaat 27845306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 13851758 - 13851722
Alignment:
Q  213 ctgttatgaatcatctatttcattcacattgtttgaa 249  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  13851758 ctgttatgaatcatctatttcgttcacattgtctgaa 13851722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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