View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_138 (Length: 230)
Name: NF3002_low_138
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_138 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 5591523 - 5591723
Alignment:
| Q |
16 |
cagacagatgcttgaaattaatgaaacccaatcattagttaatcattcagttcctaatcaaataattaccttcgtccttatcacacttcatgtagattat |
115 |
Q |
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| T |
5591523 |
cagacagatgcttgaaattaatgaaacccaatcattagttaatcattcagttcctaatcaaataattaccttcgtccttatcacacttaatgtagattat |
5591622 |
T |
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| Q |
116 |
ttactgtacaaatatatgggataatatcatcagatacacacttatatatagttatcgaataatttatttaacacaaatcaaatcaagcttaaggtggtat |
215 |
Q |
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| T |
5591623 |
ttactgtataaatatatgggataatatcatcagatacacacttatatatagttatcgaataatttatttaacacaaatcaaatcaagcttaaggtggtat |
5591722 |
T |
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| Q |
216 |
a |
216 |
Q |
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| T |
5591723 |
a |
5591723 |
T |
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