View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_139 (Length: 229)
Name: NF3002_low_139
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_139 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 33810714 - 33810505
Alignment:
| Q |
20 |
cacagcactccagtgttcttttcctggatttgataggaatatactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810714 |
cacagcactccagtgttcttttcctggatttgataggaatctactcacgactcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacata |
33810615 |
T |
|
| Q |
120 |
aggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810614 |
aggctacccacggctgaagaatagggcaccttgctcatttcttctttctcttgatcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
33810515 |
T |
|
| Q |
220 |
atggaacatg |
229 |
Q |
| |
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|||||||||| |
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| T |
33810514 |
atggaacatg |
33810505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 33815632 - 33815423
Alignment:
| Q |
20 |
cacagcactccagtgttcttttcctggatttgataggaatatactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815632 |
cacagcactccagtgttcttttcctggatttgataggaatctactcacgactcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacata |
33815533 |
T |
|
| Q |
120 |
aggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815532 |
aggctacccacggctgaagaatagggcaccttgctcatttcttctttctcttgatcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
33815433 |
T |
|
| Q |
220 |
atggaacatg |
229 |
Q |
| |
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|||||||||| |
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| T |
33815432 |
atggaacatg |
33815423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 4836749 - 4836958
Alignment:
| Q |
20 |
cacagcactccagtgttcttttcctggatttgataggaatatactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacata |
119 |
Q |
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|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4836749 |
cacagcactccagtgttcctttcctgggtttgataggaatctactcacgactcctacaacataaccgatgtctggcctcgtgtagaccatggcgtacata |
4836848 |
T |
|
| Q |
120 |
aggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
219 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4836849 |
aggctacccacagctgaagaatagggaaccttgctcatttcttctttctcttggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
4836948 |
T |
|
| Q |
220 |
atggaacatg |
229 |
Q |
| |
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||||||||| |
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| T |
4836949 |
gtggaacatg |
4836958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 54968415 - 54968624
Alignment:
| Q |
20 |
cacagcactccagtgttcttttcctggatttgataggaatatactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacata |
119 |
Q |
| |
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||||||| |||| || |||||||||||||| || |||||| ||||||| |||||||| ||||| | |||||||| || ||||| ||||| ||||||||| |
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| T |
54968415 |
cacagcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttgtgcaaaccattgcgtacata |
54968514 |
T |
|
| Q |
120 |
aggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
219 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54968515 |
aggctacccacagctgaagaatagggcaccttgctcatttcttctttctcttggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggta |
54968614 |
T |
|
| Q |
220 |
atggaacatg |
229 |
Q |
| |
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||||||||| |
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| T |
54968615 |
gtggaacatg |
54968624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 1716 - 1523
Alignment:
| Q |
36 |
tcttttcctggatttgataggaatatactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctg |
135 |
Q |
| |
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|||||||||||||| || |||||| ||||||| |||||||| ||||| | |||||||| || ||||| ||||| |||||||||||||| ||||| |||| |
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| T |
1716 |
tcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttgtgcaaaccattgcgtacataaggcttcccacagctg |
1617 |
T |
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| Q |
136 |
aagaatagggcaccttgctcatttcttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatg |
229 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
1616 |
aagaatagggcaccttgctcatttcttctttctcttggtcattctcaggacattgtgtcttattgagtttcaaatgaccaggtagtggaacatg |
1523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 22982385 - 22982486
Alignment:
| Q |
61 |
tactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttc |
160 |
Q |
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||||||| | |||||| ||||| | |||||||| || ||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
22982385 |
tactcacaattcctaccgcataagcaatgtctggtcttgtgcaaaccaatgcgtacataaggctacccacaacagaagaatagggcaccttgctcatttc |
22982484 |
T |
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| Q |
161 |
tt |
162 |
Q |
| |
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|| |
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|
| T |
22982485 |
tt |
22982486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 23806023 - 23805922
Alignment:
| Q |
61 |
tactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttc |
160 |
Q |
| |
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||||||| | |||||| ||||| | |||||||| || ||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
23806023 |
tactcacaattcctaccgcataagcaatgtctggtcttgtgcaaaccaatgcgtacataaggctacccacaacagaagaatagggcaccttgctcatttc |
23805924 |
T |
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| Q |
161 |
tt |
162 |
Q |
| |
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|| |
|
|
| T |
23805923 |
tt |
23805922 |
T |
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Back To:
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