View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_140 (Length: 227)

Name: NF3002_low_140
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_140
NF3002_low_140
[»] chr5 (6 HSPs)
chr5 (7-227)||(2327376-2327596)
chr5 (7-139)||(1374675-1374808)
chr5 (64-147)||(37325796-37325876)
chr5 (64-132)||(30874610-30874679)
chr5 (54-139)||(8117431-8117513)
chr5 (54-134)||(28461154-28461233)
[»] chr7 (10 HSPs)
chr7 (60-139)||(24237122-24237201)
chr7 (58-139)||(48826221-48826302)
chr7 (26-139)||(19835346-19835459)
chr7 (54-141)||(13726420-13726506)
chr7 (54-139)||(24375568-24375652)
chr7 (55-147)||(19423915-19424006)
chr7 (75-139)||(37180273-37180337)
chr7 (58-139)||(2898491-2898570)
chr7 (64-128)||(22696240-22696304)
chr7 (58-86)||(21529886-21529914)
[»] chr2 (6 HSPs)
chr2 (54-137)||(29264403-29264486)
chr2 (60-139)||(35819355-35819431)
chr2 (75-139)||(17316305-17316369)
chr2 (60-130)||(7154711-7154782)
chr2 (64-128)||(7893241-7893308)
chr2 (57-134)||(45709789-45709866)
[»] chr4 (7 HSPs)
chr4 (55-146)||(3125221-3125312)
chr4 (58-139)||(12049865-12049946)
chr4 (54-139)||(51850439-51850524)
chr4 (58-139)||(54857066-54857147)
chr4 (58-139)||(49600371-49600451)
chr4 (64-139)||(34559365-34559440)
chr4 (75-140)||(11388843-11388909)
[»] chr1 (11 HSPs)
chr1 (7-156)||(44287665-44287816)
chr1 (61-139)||(32226109-32226186)
chr1 (58-139)||(31460927-31461008)
chr1 (64-139)||(19636104-19636179)
chr1 (64-125)||(33858148-33858209)
chr1 (64-125)||(33922714-33922775)
chr1 (54-139)||(36497075-36497160)
chr1 (54-98)||(37490816-37490860)
chr1 (77-139)||(36551411-36551472)
chr1 (54-139)||(50741399-50741485)
chr1 (54-139)||(25710802-25710884)
[»] chr6 (2 HSPs)
chr6 (54-139)||(31462436-31462521)
chr6 (75-136)||(2252085-2252146)
[»] scaffold0380 (1 HSPs)
scaffold0380 (54-142)||(10480-10568)
[»] scaffold0072 (1 HSPs)
scaffold0072 (54-139)||(6035-6120)
[»] scaffold0172 (1 HSPs)
scaffold0172 (54-134)||(30728-30808)
[»] chr8 (8 HSPs)
chr8 (55-139)||(25029639-25029723)
chr8 (55-139)||(13341630-13341715)
chr8 (58-139)||(22576025-22576106)
chr8 (78-134)||(14362233-14362289)
chr8 (71-139)||(27707924-27707993)
chr8 (64-116)||(5124554-5124606)
chr8 (58-86)||(1789560-1789588)
chr8 (56-139)||(28855435-28855519)
[»] scaffold0252 (1 HSPs)
scaffold0252 (54-139)||(16617-16703)
[»] chr3 (3 HSPs)
chr3 (64-139)||(31203680-31203755)
chr3 (64-139)||(30484847-30484923)
chr3 (58-133)||(41654208-41654282)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2327596 - 2327376
Alignment:
Q  7 tcatgagatttgagttttataattttatattaaatataagnnnnnnngttgagaaatatataagtttgtttatactttatagcatttttcatctaatttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327596 tcatgagatttgagttttataattttatattaaatataagtttttttgttgagaaatatataagtttgtttatactttatagcatttttcatctaatttg 2327497  T
Q  107 ttcaaaaaataatcaaatatcggtgaccactatatgctatcacgctatcctattttgggatcgtacaccgccatccgagattgactactatggataagaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  2327496 ttcaaaaaataatcaaatatcggtgaccactatatgctatcatgctatcctattctggggtcgtacaccgccatccgagattgactactatggataagaa 2327397  T
Q  207 aatatgatgatttgatggttt 227  Q
    |||||||||||||||||||||    
T  2327396 aatatgatgatttgatggttt 2327376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 1374675 - 1374808
Alignment:
Q  7 tcatgagatttgagttttataatt----ttatattaaatataagnnnnnnngttgagaaatatataagtttgtttatactttatagcatttttcatctaa 102  Q
    ||||||||||||||| ||||||||    ||||||||||||||||        || |||||||| |||||||||||||| |||||| |||| ||||| |||    
T  1374675 tcatgagatttgagtattataattaattttatattaaatataagttttt---tttagaaatatgtaagtttgtttatattttataacattattcatgtaa 1374771  T
Q  103 tttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||||||||||||||||||||||    
T  1374772 tttgttcaaaaaataatcaaatatcggtgaccactat 1374808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 37325796 - 37325876
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactatatgctatc 147  Q
    ||||||||||||||||||||||||| |||   ||| |||||||| ||||||||||||||||| |||| ||| ||||||||||||    
T  37325796 atataagtttgtttatactttatagaatt---catgtaatttgtccaaaaaataatcaaatagcggtcaccgctatatgctatc 37325876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 30874679 - 30874610
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaa-aataatcaaatatcggtga 132  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||||    
T  30874679 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaataacaatcaaatatcggtga 30874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 8117431 - 8117513
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagc-atttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||||||||||||||||   || ||| ||||| ||| |||| ||||||||||||||| |||||||||| ||||    
T  8117431 gttgagaaatatataagtttgtttatacttt---gctattattcatataa-ttgtccaaaaaataatcaaacatcggtgaccgctat 8117513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 28461233 - 28461154
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgacc 134  Q
    ||||||||||||| |||||| ||||||  |||||  ||| || || |||||||| ||||||| |||||||||| |||||||    
T  28461233 gttgagaaatatacaagtttatttatagcttataatattgtttatgtaatttgtccaaaaaa-aatcaaatattggtgacc 28461154  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 24237201 - 24237122
Alignment:
Q  60 aaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  24237201 aaatatgtaagtttgtttatactttataacattattcatgtaatttgttcaaaaaataatcaaatatcggtgaccactat 24237122  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 48826221 - 48826302
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  48826221 agaaatatacaagtttgtttatactttataccattattcatgtaatttgttcaaaaaataatcaaatgtcggtgaccactat 48826302  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 19835346 - 19835459
Alignment:
Q  26 taattttatattaaatataagnnnnnnngttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaata 125  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||  |||| |||||| | |||||||||||||||||    
T  19835346 taattttatattaaatataattttttttgttgagaaatatataagtttgtttatactttatagtattaatcatgtaatttctccaaaaaataatcaaata 19835445  T
Q  126 tcggtgaccactat 139  Q
    || |||||| ||||    
T  19835446 tcagtgaccgctat 19835459  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 13726420 - 13726506
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactatat 141  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||| |||||| ||||||    
T  13726420 gttgagaaatatataagtttgtttata-tttatagtattattcatgtaatttgtccaaaaaataatcaaatatcagtgaccgctatat 13726506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 24375568 - 24375652
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||||| ||||||||| ||||    
T  24375568 gttgagaaatatataagtttgtttatagtttatagtattattcatgtaatttg-tcaaaaaataatcaaatgtcggtgaccgctat 24375652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 19423915 - 19424006
Alignment:
Q  55 ttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactatatgctatc 147  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| ||| ||| || ||||||||||||||||||||||||  |||| ||||||    
T  19423915 ttgagaaatatataagtttgtttatactttatagtattattcatgtaaattg-tccaaaaataatcaaatatcggtgaccgttataggctatc 19424006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 37180273 - 37180337
Alignment:
Q  75 tttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||| || ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  37180273 tttatatttaataacattattcatgtaatttgttcaaaaaataatcaaatatcggtgaccactat 37180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 2898491 - 2898570
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||| |||||||||||||||||||||  || ||||| | |||||| |||||||||||||||| ||||||||| ||||    
T  2898491 agaaatatacaagtttgtttatactttatag-tttattcatgt-atttgtccaaaaaataatcaaatttcggtgaccgctat 2898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 22696304 - 22696240
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcg 128  Q
    |||||||||||||| |||||||||| ||| | ||| ||| |||| ||||||||||||||||||||    
T  22696304 atataagtttgtttgtactttatagtattatacatgtaacttgtccaaaaaataatcaaatatcg 22696240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 21529886 - 21529914
Alignment:
Q  58 agaaatatataagtttgtttatactttat 86  Q
    |||||||||||||||||||||||||||||    
T  21529886 agaaatatataagtttgtttatactttat 21529914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 29264403 - 29264486
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccact 137  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  29264403 gttgagaaatttataagtttgtttatactttatagtattattcatgtaatttgtccaaaaaataatcaaatatcggtgaccact 29264486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 35819355 - 35819431
Alignment:
Q  60 aaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||| ||||||||||||||||||   |||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  35819355 aaatatacaagtttgtttatacttta---cattattcatgtaatttgttcaaaaaataatcaaatatcggtgaccgctat 35819431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 17316369 - 17316305
Alignment:
Q  75 tttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  17316369 tttatactttataacattattcatgtaatttgttcaaaaaataatccaatatcggtgaccactat 17316305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 7154782 - 7154711
Alignment:
Q  60 aaatatataagtttgtttatactttatagcatttttcatctaattt-gttcaaaaaataatcaaatatcggt 130  Q
    |||||||||||||||||||||||||||| | || ||||| | |||| |||||||||||||||||||||||||    
T  7154782 aaatatataagtttgtttatactttatacccttattcatgtcatttggttcaaaaaataatcaaatatcggt 7154711  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 7893308 - 7893241
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcat---ctaatttgttcaaaaaataatcaaatatcg 128  Q
    ||||||||||||||||||||||||| ||| || ||   ||||||||||||||||||||||||||||||    
T  7893308 atataagtttgtttatactttatagtattattaatatactaatttgttcaaaaaataatcaaatatcg 7893241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 45709866 - 45709789
Alignment:
Q  57 gagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgacc 134  Q
    ||||| ||| |||||||||||||||||||||| ||| ||| | |||||||| | ||||||||||||||| ||||||||    
T  45709866 gagaactatttaagtttgtttatactttatagtattattcttataatttgtcctaaaaataatcaaataccggtgacc 45709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 3125221 - 3125312
Alignment:
Q  55 ttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactatatgctat 146  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  3125221 ttgagaaatatataagtttgtttatacttcatagtattattcatgtaatttgtcaaaaaaataatcaaatatcggtgaccgctatacgctat 3125312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 12049865 - 12049946
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||| |||||||||||||||||||| ||||    
T  12049865 agaaatatataagtttgtttatactttatatcattattcatgtaatatgttcaaaacataatcaaatatcggtgaccgctat 12049946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 51850524 - 51850439
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||||||| ||| |||||||  ||| ||||| |||||||| |||||||||||||||||||||||||| ||||    
T  51850524 gttgagaaatatataagtttgtctattctttataatattattcatgtaatttgtccaaaaaataatcaaatatcggtgaccgctat 51850439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 54857066 - 54857147
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||| ||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||||||| |||||| ||||    
T  54857066 agaaatataaaagtttgtttatactttatactattattcatgtaatttgttcaaaaaataatcaaatatctgtgaccgctat 54857147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 49600371 - 49600451
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||| |||||||||||||||| |||| |||| || || |||||||||||||||||||||| |||||||||||||||||    
T  49600371 agaaatatgtaagtttgtttatactctataacattatt-atgtaatttgttcaaaaaataatcagatatcggtgaccactat 49600451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 34559440 - 34559365
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||| |||||||| ||| || || |||||||  || |||||||||||||||| |||||| ||||    
T  34559440 atataagtttgtttatgctttatagtattattgatgtaatttgaccataaaataatcaaatatcagtgaccgctat 34559365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 11388909 - 11388843
Alignment:
Q  75 tttatactttatagcatttttcatctaatttgttcaaaaaa-taatcaaatatcggtgaccactata 140  Q
    ||||||||||| || ||| ||||| |||||||| ||||||| ||||||||||| |||||||||||||    
T  11388909 tttatactttagagtattattcatgtaatttgtccaaaaaaataatcaaatattggtgaccactata 11388843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 44287665 - 44287816
Alignment:
Q  7 tcatgagatttgagttttataatt----ttatattaaatataagnnnnnnngttgagaaatatataagtttgtttatactttatagcatttttcatctaa 102  Q
    ||||||||||||||| ||||||||    ||||||||||||||||        || |||||||| ||||||||||||| ||||||| |||| ||||| |||    
T  44287665 tcatgagatttgagtgttataattaattttatattaaatataagtttttt--tttagaaatatgtaagtttgtttattctttataacattattcatgtaa 44287762  T
Q  103 tttgttcaaaaaataatcaaatatcggtgaccactatatgctatcacgctatcc 156  Q
    ||||||||||||||||||||| |||| |||| ||||||||| | ||||||||||    
T  44287763 tttgttcaaaaaataatcaaacatcgatgacaactatatgccaacacgctatcc 44287816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 32226186 - 32226109
Alignment:
Q  61 aatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||| |||||||||||||||||||| |||| ||||| |||||||  |||||||||||||||||||||||||||||||    
T  32226186 aatatacaagtttgtttatactttataccattattcatgtaatttgc-caaaaaataatcaaatatcggtgaccactat 32226109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 31460927 - 31461008
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||| ||||||||||||||||| |||||| |||| ||||| |||||| ||||| |||||||||||||||||| ||||||||    
T  31460927 agaaacatataagtttgtttatattttataccattattcatgtaatttattcaacaaataatcaaatatcggtaaccactat 31461008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 19636104 - 19636179
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||||||||||||||| | ||| ||||| |||||||| |||||||||||| |||||||| |||| ||||    
T  19636104 atataagtttgtttatactttatcgtattattcatgtaatttgtccaaaaaataatccaatatcggcgaccgctat 19636179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 33858209 - 33858148
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaata 125  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| |||||||| ||||||||    
T  33858209 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 33858148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 33922714 - 33922775
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaata 125  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| |||||||| ||||||||    
T  33922714 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaatgatcaaata 33922775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 36497075 - 36497160
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||||| |||||||||| || ||||||| ||| ||||| || |||||  | |||||||||||||||| |||||| ||||    
T  36497075 gttgagaaatatacaagtttgtttgtattttatagtattattcatgtagtttgtcaacaaaataatcaaatatcagtgaccgctat 36497160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 37490860 - 37490816
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcat 98  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  37490860 gttgagaaatatataagtttgtttatattttatagcattattcat 37490816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 36551411 - 36551472
Alignment:
Q  77 tatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||| |||| ||||| | |||||||||||| |||||||||||||||||||| ||||    
T  36551411 tatactttataacattattcatgtgatttgttcaaaa-ataatcaaatatcggtgaccgctat 36551472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 50741399 - 50741485
Alignment:
Q  54 gttgagaaatatataa-gtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||||| || |||||||| |||||| ||| |   ||||| || ||||| |||||||||||||||||||||||||| ||||    
T  50741399 gttgagaaatatacaaagtttgtttttactttttagtacaattcatgtagtttgtccaaaaaataatcaaatatcggtgaccgctat 50741485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 25710884 - 25710802
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||| ||| |||||||||||| |  || ||| | ||||||| || |||||||||||||||||||||||| ||||    
T  25710884 gttgagaaatatataa-tttttttatactttat-ggtttattcttgtaatttg-tccaaaaataatcaaatatcggtgaccgctat 25710802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 31462521 - 31462436
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||||||||||||| |||||| ||| ||||| || |||||  ||||||||||||||||||||||||||||||    
T  31462521 gttgagaaatatataagtttgtttataccttatagtattattcatgtagtttgtcaaaaaaataatcaaatatcggtgaccactat 31462436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 2252146 - 2252085
Alignment:
Q  75 tttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccac 136  Q
    |||||| |||||| |||  ||||| |||||||||||| ||||||||||||||||||||||||    
T  2252146 tttatagtttataccatcattcatgtaatttgttcaataaataatcaaatatcggtgaccac 2252085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 10568 - 10480
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactatatg 142  Q
    ||||||||||||||| ||||||||||||||||||| ||| || || | |||||| |||||||||||||||||||||||||| |||||||    
T  10568 gttgagaaatatataggtttgtttatactttatagtattattgatgttatttgtccaaaaaataatcaaatatcggtgaccgctatatg 10480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 6120 - 6035
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||||||| ||||||| ||||    
T  6120 gttgagaaatatgtaagtttgtttatacttcatagcattattcatgtaatttttccaaaaaataatcaaatattggtgaccgctat 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 30808 - 30728
Alignment:
Q  54 gttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgacc 134  Q
    |||||||||||||||||||||||||| |||||| | ||| ||||| |||||||| |||||||| |||||||||||||||||    
T  30808 gttgagaaatatataagtttgtttatgctttatggaattattcatataatttgtccaaaaaatgatcaaatatcggtgacc 30728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 25029639 - 25029723
Alignment:
Q  55 ttgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||||||||||||||||||| | | ||||| |||||||| |||||| |||||||||||| |||||| ||||    
T  25029639 ttgagaaatatataagtttgtttatactttatagtaatattcatgtaatttgtccaaaaattaatcaaatatccgtgaccgctat 25029723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 13341630 - 13341715
Alignment:
Q  55 ttgagaaatatataagtttgtttatactttat-agcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||| ||||||||||||||||||  || ||| ||||| |||||||| |||||||||||||||||||||||||| ||||    
T  13341630 ttgagaaatatacaagtttgtttatactttaacagtattattcatgtaatttgtccaaaaaataatcaaatatcggtgaccgctat 13341715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 22576106 - 22576025
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||  |||||||||||||||||||| |||| ||||  |||||||||||||| |||||||||||||||||||| ||||    
T  22576106 agaaatatgcaagtttgtttatactttataccattattcaagtaatttgttcaaaatataatcaaatatcggtgaccgctat 22576025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 14362233 - 14362289
Alignment:
Q  78 atactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgacc 134  Q
    |||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||    
T  14362233 atactttataccattattcatgtaatttgttaaaaaaataatcaaatatcggtgacc 14362289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 27707993 - 27707924
Alignment:
Q  71 tttgtttatactttatagcatttttcatctaatttgttcaaaaaataatc-aaatatcggtgaccactat 139  Q
    |||||||||||||||||| ||| ||||| |||||||| |||||||||||| ||||||| |||||| ||||    
T  27707993 tttgtttatactttatagtattattcatgtaatttgtccaaaaaataatcaaaatatcagtgaccgctat 27707924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 5124554 - 5124606
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaat 116  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| ||||||||    
T  5124554 atatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaat 5124606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 1789560 - 1789588
Alignment:
Q  58 agaaatatataagtttgtttatactttat 86  Q
    |||||||||||||||||||||||||||||    
T  1789560 agaaatatataagtttgtttatactttat 1789588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 28855435 - 28855519
Alignment:
Q  56 tgagaaatatataagtttgtttatactttatagcatttttcatctaatttgttc-aaaaaataatcaaatatcggtgaccactat 139  Q
    ||||||||||  ||||||||||||||| ||||  ||| ||||| |||||||| | ||||||| ||||||||| | ||||| ||||    
T  28855435 tgagaaatattaaagtttgtttatactctataatattattcatgtaatttgtccaaaaaaatgatcaaatattgatgaccgctat 28855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 16703 - 16617
Alignment:
Q  54 gttgagaaatatataagtttgttta-tactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||| |||||||||  |||||||||| ||| ||||| |||||||| ||||||||||||||||||| |||||| ||||    
T  16703 gttgagaaatatatcagtttgttttgtactttatagtattattcatgtaatttgtccaaaaaataatcaaatatcagtgaccgctat 16617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 31203680 - 31203755
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||||||||||||  |||||| ||| || || |||||||| |||||||||||||||||||||| ||| ||||    
T  31203680 atataagtttgtttatatcttatagtattatttatgtaatttgtccaaaaaataatcaaatatcggtaacctctat 31203755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 30484923 - 30484847
Alignment:
Q  64 atataagtttgtttatactttatagcatttttcatctaatttgttc-aaaaaataatcaaatatcggtgaccactat 139  Q
    |||||||| | || ||||||||||| ||| ||||| |||||||| | ||||||||||||||||| ||||||| ||||    
T  30484923 atataagtgttttaatactttatagtattattcatgtaatttgtacaaaaaaataatcaaatattggtgaccgctat 30484847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 41654208 - 41654282
Alignment:
Q  58 agaaatatataagtttgtttatactttatagcatttttcatctaatttgttcaaaaaataatcaaatatcggtgac 133  Q
    |||||||| |||| ||||| |||||||||| | || ||||| ||||||| |||||| ||||||||||||| |||||    
T  41654208 agaaatatgtaagcttgtt-atactttataccgttattcatgtaatttggtcaaaatataatcaaatatcagtgac 41654282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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