View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_142 (Length: 226)
Name: NF3002_low_142
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_142 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 41173789 - 41173585
Alignment:
| Q |
14 |
tgaattagattattaaaaaacactataaacaagtaaatataggttataagctagtgagaaaatgatgattaccaaaccaaaaagagcacataaatcgatg |
113 |
Q |
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| T |
41173789 |
tgaattagattattaaaaaacactataaacaagtaaatataggttataagctagtgagaaaatgatggttaccaaaccaaaaagagcacataaatcgaag |
41173690 |
T |
|
| Q |
114 |
ggaaacagacctgttttcttcaggagatgacaaaatgcgcccaccaatgacaccaaacggtgtcttttatcagaatccaaagtaccgtcctccttgatga |
213 |
Q |
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| T |
41173689 |
ggaaacagacctgttttcttcaggagatgacaaaatgcgcccaccaatgacaccaaacggtgtcttttatcagaatccaaagtaccgtcctccttgataa |
41173590 |
T |
|
| Q |
214 |
tgtcc |
218 |
Q |
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||||| |
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| T |
41173589 |
tgtcc |
41173585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 39276408 - 39276344
Alignment:
| Q |
14 |
tgaattagattattaaaaaacactataaacaagtaaatataggttataagctagtgagaaaatga |
78 |
Q |
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|||||||| |||| ||||||| ||||| | |||||| ||| |||||||||| |||||||||||| |
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| T |
39276408 |
tgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatga |
39276344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 24887951 - 24887884
Alignment:
| Q |
23 |
ttattaaaaaacactataaacaagtaaatataggttataagctagtgagaaaatgatgattaccaaac |
90 |
Q |
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|||||||||||||| |||||| |||||| |||||||||||||| || | ||| ||| ||||| ||||| |
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| T |
24887951 |
ttattaaaaaacacgataaactagtaaaaataggttataagctcgtcaaaaagtgacgattatcaaac |
24887884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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