View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_145 (Length: 221)
Name: NF3002_low_145
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_145 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0607 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0200 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 27778 - 27961
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27778 |
cacacactgcacacctatcagtacactaaactcctcttgattgcaatcggattcttatgggcaaacaattacgacaaactctccaaatgaaattcttgac |
27877 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27878 |
cttcgggggcaattttaaactccaaatacaatttcaattacccgacacacggtgttgtacaacggccacatcatgattcagaat |
27961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 7436375 - 7436558
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
7436375 |
cacacactgcacacctatcagtacactgaacttcttttgattgcaatcggattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgac |
7436474 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||| | || ||||||||||||| |||||| |||||| ||||||| | |||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
7436475 |
ctttgggggcaattttaaactctaaatacaattccagttacccggcacacggtgttgtacaactgccacatcatgattcagaat |
7436558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 32956736 - 32956553
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||| | |||||||| || ||||| |||||||| |||||||| ||| ||| ||||| ||||||||| || |
|
|
| T |
32956736 |
cacacactacacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaac |
32956637 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||| || |||||||| ||||| |||| |||||| ||||||| |||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
32956636 |
tttcaggggaaattttaagctccagatacaattccagttacccggtacacggtgttgaacaattgccatatcatgattcagaat |
32956553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 51192713 - 51192896
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||| |
|
|
| T |
51192713 |
cacacactgcacacctatcagtacactgaactccttttgattgcaatcggattcttgtgggcaaacacgtacgacaagctctccatagaaaattcttgac |
51192812 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||| | || |||||||||||||||||||| |||||| ||||||| | |||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
51192813 |
ctttgggggcaattttaaactccaaatacaattccagttacccggcacacggtgttgtacaactgccacatcatgattcagaat |
51192896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 8457623 - 8457440
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
8457623 |
cacacactgcacacctatcagtacactgaactccttttgattgcaaacagattcttgtgggcaaacaattacgacaaactttccataggaaattcttgac |
8457524 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||| | || |||||||||||||||||||| ||| || ||| ||||| |||| | ||||||||| |||| ||||||||| ||||| |
|
|
| T |
8457523 |
ctttgggggcaattttaaactccaaatacaatttcagttatccgacacacggtattgtacaactgccaaatcatgatttagaat |
8457440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 43019196 - 43019375
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||| ||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
43019196 |
cacacactgcacacctaccagtacactaaactccttttgattgcaatctaattcttgtgggcaaacaattacgacaagctctccatatgaaattcttgac |
43019295 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattca |
201 |
Q |
| |
|
||||| || ||||||||| |||||||||| ||| || ||||||| | |||| |||||||||| ||| ||||||||||| |
|
|
| T |
43019296 |
cttcgggggcaattttaagctccaaatacaatttcagttacccggcacacgtggttgtacaactaccacatcatgattca |
43019375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 13441461 - 13441292
Alignment:
| Q |
33 |
acacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggcc |
132 |
Q |
| |
|
||||||||||| ||||||||||||| ||| || || |||||||| |||||||||||||||||||| ||||||| ||||| ||||| ||||||| | | |
|
|
| T |
13441461 |
acacctatcagtacactgaactccttttgcttctaagcggattctcttgggcaaacaattacgacaagctctccacatgaagttcttaaccttcggaggc |
13441362 |
T |
|
| Q |
133 |
aattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattca |
201 |
Q |
| |
|
|||||||| ||| ||| || ||||||||||||| | || ||||||||||||| || | ||||||||||| |
|
|
| T |
13441361 |
aattttaagctctaaacacaattccaattacccagcacaagatgttgtacaactgcaacatcatgattca |
13441292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 21689029 - 21688984
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattct |
77 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
21689029 |
cacacctatcagtacattgaactccttttgattgtaatcggattct |
21688984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 9360032 - 9359858
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| || |
|
|
| T |
9360032 |
cacacctatcagtacactgaactccttttgattgcaatcggattcttgtgggcagacaattacgacaagctctccataggaaattcttgaccttcggggg |
9359933 |
T |
|
| Q |
132 |
caattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| | |||| || |||||||| | || ||||||||||||||| |
|
|
| T |
9359932 |
caattttaaactccaaatacaattccagttaccttccacacggtgatgtacaactgtcacatcatgattcagaat |
9359858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 30465957 - 30465783
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||| || ||||| |||||||| |||||||| ||| ||| ||||| ||||||||| || |||| || |
|
|
| T |
30465957 |
cacacctatcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaactttcggggg |
30465858 |
T |
|
| Q |
132 |
caattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| | | |||| ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
30465857 |
caattttaaactccagatacaattccagttacctggcacacggtgttgaacaactaccaaatcatgattcagaat |
30465783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 24268571 - 24268745
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||| | ||| ||||| ||||| | || |
|
|
| T |
24268571 |
cacacctatcagtacaatgaactccttttgattgcaagcggattctcgtgggcaaacaattacgacaagctctccacaggaagttcttaacctttgggga |
24268670 |
T |
|
| Q |
132 |
caattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||||||| ||||||| || |||||||||||| || |||| |||||| ||| ||| ||||||||| ||||| |
|
|
| T |
24268671 |
taattttaagctccaaacacaattccaattacctaacacacggtgttgtgaaacttccacatcatgatttagaat |
24268745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 42851263 - 42851179
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctcca |
107 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42851263 |
cacacactgcacacctatcagtacactgaactccttttgattgcaatctaattcttgtgggcaaacaattacgacaagctctcca |
42851179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 3963135 - 3963318
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| ||||||||||||| | |||||||| || ||||| |||||||| ||||| || ||| ||| ||||| |||||||| || |
|
|
| T |
3963135 |
cacacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattgcggcaagctcgccaaagaaaattcttaac |
3963234 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||| || || |||||||||||| |||| ||||||||||||| |||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
3963235 |
tttcgggggcagttttaaactccagatacaattccaattacccagtacacggtgttgaacaattgccatatcatgattcagaat |
3963318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 33336824 - 33336987
Alignment:
| Q |
43 |
gcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggccaattttaaac |
142 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| || ||||||||||| | ||| ||||||| | ||||||||| ||||| | ||||||||||| |
|
|
| T |
33336824 |
gcacactgaacgccttttgattgcaatcggattctcgtaggcaaacaattgtggcaagctctccacaagaaattctttacctttagtggcaattttaaac |
33336923 |
T |
|
| Q |
143 |
tccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||||| || ||| ||||||| | |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
33336924 |
tccaaacacaattttaattacctggaacacgatgttgtaaaactgccacatcatgattcagaat |
33336987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 25612204 - 25612321
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| ||||||||||||| | |||||||| || ||||| |||||||| |||||||| ||| ||||||||| ||||||||| || |
|
|
| T |
25612204 |
cacacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctctccaaaggaaattcttaac |
25612303 |
T |
|
| Q |
123 |
cttcgaggccaattttaa |
140 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
25612304 |
tttcgggggcaattttaa |
25612321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 48816199 - 48816235
Alignment:
| Q |
83 |
gcaaacaattacgacaaactctccaaatgaaattctt |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48816199 |
gcaaacaatcacgacaaactctccaaatgaaattctt |
48816235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 215763 - 215584
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
215763 |
cacacactgcacacctatcaatacactgaactccttttgattgcaatcggattcttgtgggcaaacaattacgacaagctctccataggaaattcttgaa |
215664 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattca |
201 |
Q |
| |
|
|||||||| |||||||| |||||||||| | || | ||||| ||| |||| ||||||| ||| ||||||||||||||| |
|
|
| T |
215663 |
cttcgagggaaattttaatctccaaatacaactcgagttacctgacacacggtgttgtaaaacttccatatcatgattca |
215584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 32283606 - 32283789
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||| | ||||||||||| |
|
|
| T |
32283606 |
cacacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaagaattacgaaaaactctccatagaaaattcttgac |
32283705 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||| | || |||||||||||||||||||| |||| | ||||||| | || | ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
32283706 |
ctttgggggcaattttaaactccaaatacaattctagttacccggcacatggtgttgtacaactgccacatcattattcagaat |
32283789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 32577335 - 32577212
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| ||| ||||||||||||| | |||||||| || ||||| |||||||| |||||||| ||| ||| ||||| ||||||||| || |
|
|
| T |
32577335 |
cacacactgcacacctgtcaatacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaac |
32577236 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactcca |
146 |
Q |
| |
|
|||| || ||||||||| ||||| |
|
|
| T |
32577235 |
tttcgggggcaattttaatctcca |
32577212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 14220624 - 14220700
Alignment:
| Q |
49 |
tgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgacctt |
125 |
Q |
| |
|
||||| ||| |||||| ||| || | |||||| ||||||||||||||||| ||||||| | ||||||||| ||||| |
|
|
| T |
14220624 |
tgaacaccttttgattacaaccgaactcttgttggcaaacaattacgacattctctccacaagaaattcttaacctt |
14220700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 54551896 - 54551722
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||| ||||||| |
|
|
| T |
54551896 |
cacacttatcagtacactgaactccttttgattgcaatcggattcttgtgggcaaacaattacgacaagctctccataggaaaatcttgactttcgaggg |
54551797 |
T |
|
| Q |
132 |
caattttaaactccaaatacat-tccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||| | |||| || |||||||| |||| |||||||| ||||| |
|
|
| T |
54551796 |
aaattttaaactccaaatacatgtccagttatccggcacacggtgatgtacaactgccacgtcatgatttagaat |
54551722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 26006912 - 26007084
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||| | |||||| |
|
|
| T |
26006912 |
cacacctatcagtacactaaactccttttgattgcaatcagattcttgtgggcaaacaatttcgacaagctctccatatgaaattcttgatcgtcgaggg |
26007011 |
T |
|
| Q |
132 |
caattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcaga |
203 |
Q |
| |
|
||||||||||||||||||| ||| || ||| ||| | ||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
26007012 |
aaattttaaactccaaatacaatttcagttagccggcacacagtgttgtacaactgccacatcatgattcaga |
26007084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 48445920 - 48445773
Alignment:
| Q |
59 |
ttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggccaattttaaactccaaatac-attcca |
157 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||| | || |||||||||| ||||||||| |||||| |
|
|
| T |
48445920 |
ttgattgcaatcggagtcttgtgggcaaacaattacgacaagctctccatacgaaattcttgacctttgggggcaattttaaaatccaaatacaattcca |
48445821 |
T |
|
| Q |
158 |
attacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||| || | |||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
48445820 |
gttactcggcacacggtgttgtacaactgccacatcatgattcagaat |
48445773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 22360071 - 22360253
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| || |||||||||| |||||||||||| |||||| |||| |||||||| ||||| ||||||| | |||||||||||| |
|
|
| T |
22360071 |
cacacactgcacacctatcagtactctgaactccttttgattgcaatcatattcttatgggttaacaattatgacaagctctccataagaaattcttgac |
22360170 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaata-cattccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||| ||| |||||||| ||||| |
|
|
| T |
22360171 |
cttcgggggcaattttaaactccaaatataattccagttacccgacacacg-tgttgtacaacttccacctcatgatttagaat |
22360253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 26430033 - 26430216
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| ||||||||||||| | |||||||| || ||||| |||||||| |||| || ||| ||| ||||| ||||||||| || |
|
|
| T |
26430033 |
cacacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaatcgcggcaagctcgccaaaggaaattcttaac |
26430132 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||| || ||||||||| ||||| |||| |||||| ||||||| |||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
26430133 |
tttcgggggcaattttaagctccagatacaattccagttacccggtacacggtgttgaacaattgccatatcatgattcagaat |
26430216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 23770616 - 23770799
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||||||||| |||||||||||| ||||||| |||||||| |||||||| || ||||||| | |||||||||||| |
|
|
| T |
23770616 |
cacatactgcacacctatcagtacattgaactccttttgattgcaatcagattcttatgggcaaataattacgataagctctccataggaaattcttgac |
23770715 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||| ||||||| | ||||||| |||||||| ||| ||| ||||| ||||| |
|
|
| T |
23770716 |
cttcgggggcaattttaaactccaaatacaattccagttacccggcacacgatgatgtacaactgcctcatcgtgatttagaat |
23770799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 23797551 - 23797680
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| || | |||||||||||| |
|
|
| T |
23797551 |
cacatactgcacagctatcagtacactgaactccttttgattgcaatcggattcttgtgggcaaacaattatgacaagctcttcataggaaattcttgac |
23797650 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaataca |
152 |
Q |
| |
|
||||| || |||||||||||||||||||| |
|
|
| T |
23797651 |
cttcgggggaaattttaaactccaaataca |
23797680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 10213108 - 10212934
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||| | |||||| || |||||||||||||||||| ||||||| | || ||||| ||||||| || |
|
|
| T |
10213108 |
cacacctatcagtacactgaactccttttacttgcaagcagattctcgtaggcaaacaattacgacaagctctccacaaaaagttcttaaccttcggggg |
10213009 |
T |
|
| Q |
132 |
caattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
||| ||||| ||||||| || |||||||||||||||| |||| ||||||||||| | || ||||||||||||||| |
|
|
| T |
10213008 |
caactttaagctccaaacacaattccaattacccgacacacggtgttgtacaactgacacatcatgattcagaat |
10212934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 38452534 - 38452664
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
38452534 |
cacacactgcacacctatcagtacactgaactccttttgattgcaattgaattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgac |
38452633 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatacat |
153 |
Q |
| |
|
||||| | |||||||||| | ||||||||| |
|
|
| T |
38452634 |
cttcggtggcaattttaaatttcaaatacat |
38452664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 27453325 - 27453499
Alignment:
| Q |
32 |
cacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggc |
131 |
Q |
| |
|
||||| |||||| ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||| | || |
|
|
| T |
27453325 |
cacacatatcagtacaatgaactccttttgattgcaatcgaattcttgtgggcaaacaattacgacaagctctccataagaaattcttgacctttggggg |
27453424 |
T |
|
| Q |
132 |
caattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| | ||| |||| |||||| |||| ||||||||||||||| |
|
|
| T |
27453425 |
caattttaaactccaaatacaattttagttacccggcacacagtgttctacaactgccacatcatgattcagaat |
27453499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 9610343 - 9610523
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| ||||||||||||| | |||||||| || ||||| |||||||| ||||| || ||| ||| ||||| |||||||| || |
|
|
| T |
9610343 |
cacacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattgcggcaagctcaccaaagaaaattcttaac |
9610442 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcag |
202 |
Q |
| |
|
|||| || || |||||| ||||| |||| |||||||||||||| |||| ||||| |||| ||||||||||||||||| |
|
|
| T |
9610443 |
tttcgggggcagttttaagctccagatacaattccaattacccggtacacggtgttgaacaattgccatatcatgattcag |
9610523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 29242948 - 29243131
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| ||||| ||||||| | |||||||| || ||||| |||||||| |||||||| ||| ||| ||||| ||||||||| || |
|
|
| T |
29242948 |
cacacactgcacacctgtcagtacactaaactcctttagattgcaagcgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaac |
29243047 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaataca-ttccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||| || || |||||| ||||| ||||| ||||| ||||||| |||| ||||| |||| |||| ||||||||||||||| |
|
|
| T |
29243048 |
tttcgggggcatttttaagctccagatacagttccagttacccggtacacggtgttgaacaattgccacatcatgattcagaat |
29243131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 30797639 - 30797822
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| || ||||||||| | |||||||| || ||||| ||||||| |||||||| ||| ||| ||||| ||||||||| || |
|
|
| T |
30797639 |
cacacactgcacacctgtcagtgcattgaactcctttagattgcaaacgaattctcatgggcaagcaattacggcaagctcgccaaaggaaattcttaac |
30797738 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaataca-ttccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
|||| || ||||||||| ||||| ||||| ||||| ||||||| |||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
30797739 |
tttcgggggcaattttaagctccagatacaattccagttacccggtacacggtgttgaacacttgccatatcatgattcagaat |
30797822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 57697 - 57568
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
57697 |
cacacactgcacacctatcagtacactgaactccttttgattataatcggattcttgtgggaaaacaattacgacaagctctccatagaaaattcttgat |
57598 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaataca |
152 |
Q |
| |
|
||||| || ||||||||||||||||||||| |
|
|
| T |
57597 |
cttcgggggcaattttaaactccaaataca |
57568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 3040 - 3223
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||| | |||||||| |||||||| |||| ||| |||||||| ||| ||| ||||| ||||||||| || |
|
|
| T |
3040 |
cacacactgcacacctatcagtacactgaactcctttagattgcaaacggattctcgtggacaagcaattacggcaagctcgccaaaggaaattctttac |
3139 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaatac-attccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
| || || ||||||||||||| | |||| |||||| ||||||| | |||| ||||| ||||| |||| ||||||||||||||| |
|
|
| T |
3140 |
ttacgggggcaattttaaactctagatacaattccagttacccggcacacggtgttgaacaactgccacatcatgattcagaat |
3223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 186423 - 186280
Alignment:
| Q |
23 |
cacagactacacacctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgac |
122 |
Q |
| |
|
|||| ||| ||||||| |||| ||||||||||||| | |||||||| || ||||| |||||||| |||||||| ||| ||| ||||| ||||||||| || |
|
|
| T |
186423 |
cacacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaac |
186324 |
T |
|
| Q |
123 |
cttcgaggccaattttaaactccaaataca-ttccaattacccg |
165 |
Q |
| |
|
|||| || ||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
186323 |
tttcgggggcaattttaagctccagatacagttccaattacccg |
186280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 4955 - 4786
Alignment:
| Q |
35 |
acctatcagcacactgaactcctcttgattgcaatcggattcttgtgggcaaacaattacgacaaactctccaaatgaaattcttgaccttcgaggccaa |
134 |
Q |
| |
|
||||||||| ||||| ||||||| | |||||||| | |||||| ||||| || ||||||| ||| ||| ||||| ||||||||| || |||| | ||| |
|
|
| T |
4955 |
acctatcagtacactaaactcctttagattgcaaacagattctcgtgggaaagcaattacagcaagctcgccaaaggaaattcttcactttcggg--caa |
4858 |
T |
|
| Q |
135 |
ttttaaactccaaataca-ttccaattacccgacgcacgatgttgtacaacggccatatcatgattcagaat |
205 |
Q |
| |
|
| |||||||||| ||||| ||||| |||| | | |||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
4857 |
tcttaaactccagatacaattccatttacgcagcacacggtgttgtacaattgccacatcatgattcagaat |
4786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 46091466 - 46091567
Alignment:
| Q |
105 |
ccaaatgaaattcttgaccttcgaggccaattttaaactccaaataca-ttccaattacccgacgcacgatgttgtacaacggccatatcatgattcaga |
203 |
Q |
| |
|
||||| ||||||||| || ||||||| ||||| ||||||||| ||||| ||||| ||||||| | || | ||||| |||| |||| ||||||||||||| |
|
|
| T |
46091466 |
ccaaaggaaattcttaactttcgagggcaattataaactccagatacaattccagttacccggcacatggtgttgaacaattgccacatcatgattcaga |
46091565 |
T |
|
| Q |
204 |
at |
205 |
Q |
| |
|
|| |
|
|
| T |
46091566 |
at |
46091567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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