View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_146 (Length: 216)
Name: NF3002_low_146
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_146 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 1494829 - 1494642
Alignment:
| Q |
12 |
tccaagaaaattgggattggatgcagcattctcatttcctttgtagaacacacctacaattttcttctttccttcagaggcctattctcaataataattg |
111 |
Q |
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| T |
1494829 |
tccaacaaaattgggattggatgcagcattctcatttcctttgtagaacacacctacaattttcttctttccttcagaggcctattctcaataataattg |
1494730 |
T |
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| Q |
112 |
tataagaaaagtcaaagaacaaaacaaaacatacataactgaatgtatgagccgctgttaaatgtatcaaaattacaaaaatatatct |
199 |
Q |
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| T |
1494729 |
tataagaaaagtcaaagaacaaaacaaaacatacataactgaatgtatgagccgctgttaaatgtatcaaaattacaaaaatatatct |
1494642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 1490015 - 1489962
Alignment:
| Q |
49 |
cctttgtagaacacacctacaattttcttctttccttcagaggcctattctcaa |
102 |
Q |
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| T |
1490015 |
cctttgtagaacacacctacaatcttcttctttccaccagaggcctattctcaa |
1489962 |
T |
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