View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_148 (Length: 213)
Name: NF3002_low_148
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_148 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8740167 - 8740363
Alignment:
| Q |
1 |
tagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaaccaaacaaaccctatcattattttcttaaagtaattcgactttgttaa |
100 |
Q |
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| T |
8740167 |
tagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaaccaaacaaaccctatcattattttcttaaagtaattcaaccttgttaa |
8740266 |
T |
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| Q |
101 |
tgtttttcatctttttcagctcgttcagtgataaaatctgatgatcaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaa |
197 |
Q |
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| T |
8740267 |
tgtttttcatctttttcagctcgttcagtgataaaatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaa |
8740363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8705091 - 8705287
Alignment:
| Q |
1 |
tagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaac-caaacaaaccctatcattattttcttaaagtaattcgactttgtta |
99 |
Q |
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| T |
8705091 |
tagctgaagttgatgtatgcaactatgaaccttgggacttaccaggtaaaaaaacaaacaaaccct-tcattattttctcataaaaatgcaaccttttta |
8705189 |
T |
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| Q |
100 |
atgtttttcatctttttcagctcgttcagtgataaaatctgatgatcaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaa |
197 |
Q |
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| T |
8705190 |
atgtttttcatctttttcagctttttcggttgtaaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaa |
8705287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 8723637 - 8723722
Alignment:
| Q |
112 |
tttttcagctcgttcagtgataaaatctgatgatcaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaa |
197 |
Q |
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| T |
8723637 |
tttttcagctcgttcggtgataaaatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaa |
8723722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 14372540 - 14372440
Alignment:
| Q |
97 |
ttaatgtttttcatctttttcagctcgttcagtgataaaatctgatgatcaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaa |
196 |
Q |
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|||||||| |||||||||||||||| |||| ||| ||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14372540 |
ttaatgttcttcatctttttcagcttgttccgtggtaaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaa |
14372441 |
T |
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| Q |
197 |
a |
197 |
Q |
| |
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| T |
14372440 |
a |
14372440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8690819 - 8690979
Alignment:
| Q |
1 |
tagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaaccaaacaaaccctatcattattttcttaaagtaattcgactttgttaa |
100 |
Q |
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|
|||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||| | | ||| | | || ||| |
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| T |
8690819 |
tagctgaagttgatgtatgcaagttcgaaccttgggatttaccaggt--------aacaaaccccatcattattttctcacaaaaatgcaatctttctaa |
8690910 |
T |
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| Q |
101 |
tgtttttcatctttttcagctcgttcagtgataaaatctgatgatcaagaatggtttttcttgtgtcct |
169 |
Q |
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||||||| ||||||||||||| |||| |||||||||| |||||| |||||||||||||| |||||| |
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| T |
8690911 |
tgtttttgatctttttcagcttgttctttgataaaatccaatgatcccgaatggtttttcttttgtcct |
8690979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8722168 - 8722247
Alignment:
| Q |
1 |
tagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaaaaccaaacaaaccctatcattattttctta |
80 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||| |||||||||||| | |||||||||| || |||||||||||| |
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| T |
8722168 |
tagctgaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatatcaaacaaacctcattattattttctta |
8722247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 8738729 - 8738816
Alignment:
| Q |
110 |
tctttttcagctcgttcagtgataaaatctgatgatcaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaa |
197 |
Q |
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||||| ||||||||||| | |||||||| |||| | ||||||||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
8738729 |
tctttgtcagctcgttcgataataaaatcacatgacccggaatggtttttcttgtgtccttgtgattacaagtacgcaaagagtaaaa |
8738816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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