View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_15 (Length: 587)
Name: NF3002_low_15
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 32 - 568
Target Start/End: Original strand, 15644290 - 15644826
Alignment:
| Q |
32 |
aacttataacatatatcttattgaagaaaatagggtaattttaacacaaatacacttcagatcgaatatggttatgatgttcaggtcgatcatagccaat |
131 |
Q |
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| T |
15644290 |
aacttataacatatatcttattgaagaaaatagggtcattttaacacaaatacacttcagatcgaatatggttatgatgttcaggtcgatcatagccaat |
15644389 |
T |
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| Q |
132 |
tttatcaacgaaccataagacttccttgtcaagacggcaacctaaacatgtgtcgaaactatagtcttcatcggaaaatgcaatccagactccnnnnnnn |
231 |
Q |
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| T |
15644390 |
gttatcaacgaaccataagacttccttgtcaagacggcaacctaaacatgtgtcgaaactatagtcttcatggggaaatgcaatccagactccttttttt |
15644489 |
T |
|
| Q |
232 |
agttttggaggtatgcagtttatacctgcaggcaaataattgcataccatagagaactctaaacttggtggccattgccttccatgtctccagcatctgt |
331 |
Q |
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| T |
15644490 |
agttttggaggtatgcagtttatacctgcaggcaaataattgcataccatagagaactctaaacttggaggccattgccttccatgtctccagcatctgt |
15644589 |
T |
|
| Q |
332 |
cgagttcaattgactcctcgattatccgtctgcatttgaataggcatcnnnnnnnccataacttcgtcaaccaagaaatgcctaaggtatacgttttagg |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15644590 |
cgagttcaattgactcctcgattatccgtctgcatttgaataggcatctttttttccataacttagtcaaccaagaaatgcctaaggtatacgttttagg |
15644689 |
T |
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| Q |
432 |
atctccagaaaagatgtataacattgtcagcgtatactttgctgcatcatgaccttctgccgctgctgtttgtaacaagtcttttgctaatccaaagttt |
531 |
Q |
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| T |
15644690 |
atctccagaaaagatgtataacattgtcagcgcatactttgctgcatcgtgaccttctgccgctgctatttgtaacaagtcttttgctaatccaaagttt |
15644789 |
T |
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| Q |
532 |
gttgtcctttcacaaagattgattaaaccgaccctaa |
568 |
Q |
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| T |
15644790 |
gttgttctttcacaaagattgattaaaccgaccctaa |
15644826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 15644148 - 15644176
Alignment:
| Q |
17 |
atgaaacccttcatcaacttataacatat |
45 |
Q |
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| T |
15644148 |
atgaaacccttcatcaacttataacatat |
15644176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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