View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_17 (Length: 561)

Name: NF3002_low_17
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_17
NF3002_low_17
[»] chr2 (8 HSPs)
chr2 (255-548)||(32206577-32206870)
chr2 (16-189)||(32206338-32206511)
chr2 (504-548)||(32156774-32156818)
chr2 (504-548)||(32174550-32174594)
chr2 (502-548)||(32110590-32110636)
chr2 (504-548)||(32118854-32118898)
chr2 (502-548)||(32211899-32211945)
chr2 (504-536)||(32182648-32182680)
[»] chr7 (4 HSPs)
chr7 (18-147)||(37009002-37009129)
chr7 (18-147)||(37013662-37013789)
chr7 (19-148)||(19605306-19605433)
chr7 (19-147)||(19609988-19610114)
[»] chr5 (5 HSPs)
chr5 (19-148)||(36982657-36982784)
chr5 (19-147)||(36984046-36984172)
chr5 (55-121)||(16728900-16728966)
chr5 (62-146)||(1227406-1227489)
chr5 (65-100)||(16728981-16729016)
[»] chr3 (1 HSPs)
chr3 (55-147)||(8450377-8450469)
[»] chr8 (1 HSPs)
chr8 (55-147)||(21554111-21554205)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 255 - 548
Target Start/End: Original strand, 32206577 - 32206870
Alignment:
Q  255 aatgtgtgtagaatgcattttatatattcattattaatataacctgttagagcataggttcagaatgcttacttacctgttttatcataacgagtctcta 354  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32206577 aatgtgtgtagaatgcattttatatagtcattattaatataacctgttagagcataggttcagaatgcttacttacctgttttatcataacgagtctcta 32206676  T
Q  355 taatgcaactcttgtaaagtttcatgtatnnnnnnnttactgtaagcttgttagtaagatgaaagactacttgaatcgaatggcgtcatattcttctgtt 454  Q
    |||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32206677 taatgcaactcttgtaaagtttcatgtataaaaaaattactgtaaggttgttagtaagatgaaagactacttgaatcgaatggcgtcatattcttctgtt 32206776  T
Q  455 catgtcaaatgnnnnnnnattggaaaactaaaatgtttgtttcaaaatttcaacaggtgacactttcaggactgttgaatgcagtagatggtct 548  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32206777 catgtcaaatgtttttttattggaaaactaaaatgtttgtttcaaaatttcaacaggtgacactttcaggactgttgaatgcagtagatggtct 32206870  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 32206338 - 32206511
Alignment:
Q  16 cacatttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagat 115  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32206338 cacattaattattgatgttgttgaccacatatatataggtatatatatgtcaagctccctctgtgtatcaataacaattataatttcatcaatatcagat 32206437  T
Q  116 tttttcctatcatcagaacaagttctgtaatacacgaggtgattcgttcagttggttatgactgtgatcccaac 189  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32206438 tttttccaatcatcagaacaagttctgtaatacacgaggtgattcgttcagttggttatgactgtgataccaac 32206511  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 504 - 548
Target Start/End: Complemental strand, 32156818 - 32156774
Alignment:
Q  504 tcaacaggtgacactttcaggactgttgaatgcagtagatggtct 548  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  32156818 tcaacaggtgacactttcaggactattgaatgcagtagatggtct 32156774  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 504 - 548
Target Start/End: Complemental strand, 32174594 - 32174550
Alignment:
Q  504 tcaacaggtgacactttcaggactgttgaatgcagtagatggtct 548  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  32174594 tcaacaggtgacactttcaggactattgaatgcagtagatggtct 32174550  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 502 - 548
Target Start/End: Complemental strand, 32110636 - 32110590
Alignment:
Q  502 tttcaacaggtgacactttcaggactgttgaatgcagtagatggtct 548  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  32110636 tttcaacagatgacactttcaggactattgaatgcagtagatggtct 32110590  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 548
Target Start/End: Complemental strand, 32118898 - 32118854
Alignment:
Q  504 tcaacaggtgacactttcaggactgttgaatgcagtagatggtct 548  Q
    |||||||||||||||||||||||| |||||||| || ||||||||    
T  32118898 tcaacaggtgacactttcaggactattgaatgctgttgatggtct 32118854  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 548
Target Start/End: Original strand, 32211899 - 32211945
Alignment:
Q  502 tttcaacaggtgacactttcaggactgttgaatgcagtagatggtct 548  Q
    |||| |||| |||||||||| ||||| ||||||||||||||||||||    
T  32211899 tttctacagatgacactttcgggactattgaatgcagtagatggtct 32211945  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 536
Target Start/End: Complemental strand, 32182680 - 32182648
Alignment:
Q  504 tcaacaggtgacactttcaggactgttgaatgc 536  Q
    |||||||||||||||||||||||| ||||||||    
T  32182680 tcaacaggtgacactttcaggactattgaatgc 32182648  T

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Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 37009002 - 37009129
Alignment:
Q  18 catttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagattt 117  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  37009002 catttattattgatgttgttgaccatata--tataggtatatataggtcacgctccctgtgtgtatcaataacaattataatttcatcaatgtcagattt 37009099  T
Q  118 tttcctatcatcagaacaagttctgtaata 147  Q
    ||||||||||||||||||||||||||||||    
T  37009100 tttcctatcatcagaacaagttctgtaata 37009129  T

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Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 37013662 - 37013789
Alignment:
Q  18 catttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagattt 117  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  37013662 catttattattgatgttgttgaccatata--tataggtatatataggtcacgctccctgtgtgtatcaataacaattataatttcatcaatgtcagattt 37013759  T
Q  118 tttcctatcatcagaacaagttctgtaata 147  Q
    ||||||||||||||||||||||||||||||    
T  37013760 tttcctatcatcagaacaagttctgtaata 37013789  T

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Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 19605433 - 19605306
Alignment:
Q  19 atttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagatttt 118  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||    
T  19605433 atttattattgatgttgttgaccatata--tataggtatatataggtcacgctccctcagagtatcaatcacaattataatttcatcaatgtcagatttt 19605336  T
Q  119 ttcctatcatcagaacaagttctgtaatac 148  Q
    ||||||||||||||||||||||||||||||    
T  19605335 ttcctatcatcagaacaagttctgtaatac 19605306  T

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Target: chr7; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 19610114 - 19609988
Alignment:
Q  19 atttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagatttt 118  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||    
T  19610114 atttattattgatgttgttgaccatata--tataggtatatataggtcacgctccctcagagtatcaatcacaattataatttcatcaatgtcagatttt 19610017  T
Q  119 ttcctatcatcagaacaagttctgtaata 147  Q
    |||||||||||||||||||||||||||||    
T  19610016 ttcctatcatcagaacaagttctgtaata 19609988  T

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Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 36982784 - 36982657
Alignment:
Q  19 atttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagatttt 118  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  36982784 atttattattgatgttgttgaccatata--tataggtatatataggtcacgctccctcagtgtatcaatcacaattataatttcatcaatgtcagatttt 36982687  T
Q  119 ttcctatcatcagaacaagttctgtaatac 148  Q
    ||||||||||||||||||||||||||||||    
T  36982686 ttcctatcatcagaacaagttctgtaatac 36982657  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 36984172 - 36984046
Alignment:
Q  19 atttattattgatgttgttgaccacatagatataggtatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagatttt 118  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||  |||||||||| ||| |||||||||||||||| |||||||||    
T  36984172 atttattattgatgttgttgaccatata--tataggtatatataggtcacgctcccttagtgtatcaatcacagttataatttcatcaatgtcagatttt 36984075  T
Q  119 ttcctatcatcagaacaagttctgtaata 147  Q
    || ||||||||||||||||||||||||||    
T  36984074 tttctatcatcagaacaagttctgtaata 36984046  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 16728966 - 16728900
Alignment:
Q  55 tatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagattttttc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16728966 tatatataggtcacgctccctctgtgtatcaataacaattataattttatcaatatcagattttttc 16728900  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 1227489 - 1227406
Alignment:
Q  62 aggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagattttttcctatcatcagaacaagttctgtaat 146  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||||| |||||| |||||||| ||||||    
T  1227489 aggtcacgctccctctgtgtatcaattacaatcttaatttcatcaatataagattttttcct-tcatcataacaagttttgtaat 1227406  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 16729016 - 16728981
Alignment:
Q  65 tcacgctccctctgtgtatcaataacaattataatt 100  Q
    ||||||||||||||||||||||||||||||||||||    
T  16729016 tcacgctccctctgtgtatcaataacaattataatt 16728981  T

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Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 8450377 - 8450469
Alignment:
Q  55 tatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagattttttcctatcatcagaacaagttctgtaata 147  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8450377 tatatataggtcatgctccctctgtgtatcaataacaattataatttcatcaatatcagattttttcctatcatcagaacaagttctgtaata 8450469  T

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Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 21554205 - 21554111
Alignment:
Q  55 tatatataggtcacgctccctctgtgtatcaataacaattataatttcatcaatatcagatt--ttttcctatcatcagaacaagttctgtaata 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  21554205 tatatataggtcacgctccctctgtgtattaataacaattataatttcatcaatatcagattttttttcctatcatcagaacaagttctgtaata 21554111  T

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