View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_18 (Length: 550)
Name: NF3002_low_18
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_18 |
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| [»] scaffold0237 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 117 - 531
Target Start/End: Original strand, 17784473 - 17784887
Alignment:
| Q |
117 |
tgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17784473 |
tgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggtcaggaaaaacaactcttgcatgtgctgtatacaattgcattgctgatcaa |
17784572 |
T |
|
| Q |
217 |
tttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtacaactacaggagatgcttctttttgaatttactgggaaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
17784573 |
tttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtacaactacagaagatgcttctttttgaattaactgggaaga |
17784672 |
T |
|
| Q |
317 |
acgatattaagttttgcagtttaaataaagcaattcctattatcgagagtaggcttcgtgggaaaaaagttctattgattttggatgatgttgacagttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17784673 |
acgatattaagttttgcagtttaaataaagcaattcctattatcgagagtaggcttcgtgggaaaaaagttctattgattttggatgatgttgacagttt |
17784772 |
T |
|
| Q |
417 |
ggagcaactaaaagcacttgcaggcgagcttgactggtttggctctggcagcagagttattatcacaacaagggataagcatttgctgcatgtttatggt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17784773 |
ggagcaactaaaagcacttgcaggcgagcttgactgatttggctctggcagcagagttattatcacaacaagggataagcatctgctgcatgtttatggt |
17784872 |
T |
|
| Q |
517 |
gttgaaagagtctga |
531 |
Q |
| |
|
||||||||||||||| |
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|
| T |
17784873 |
gttgaaagagtctga |
17784887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 17801650 - 17802178
Alignment:
| Q |
1 |
attgggaagatcgttcaagaggtctctaaaaagattaatcatagacctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
17801650 |
attgggaagatcgttcaagaggtctctaaaaagattaatcatagacctttacatgttgccaaataccctattggtttagagtctcgagtgcaaaaagtga |
17801749 |
T |
|
| Q |
101 |
actcacttctagaagctgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17801750 |
actcacttctagaagttgaatcaaatgagggggttcgcatggtggggatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaa |
17801849 |
T |
|
| Q |
201 |
ttgcattgctgatcaatttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtacaactacaggagatgcttcttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||| |
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|
| T |
17801850 |
ttgcattgctgatcaatttgatagtctttgttttcttggtgatattagagaaaattcgaagaagcgtgggttggtagaactacaggatatgcttcttttt |
17801949 |
T |
|
| Q |
301 |
gaatttactgggaagaacgatattaagttttgcagtttaaataaagcaattcctattatcgagagtaggcttcgtgggaaaaaagttctattgattttgg |
400 |
Q |
| |
|
||||| |||||| |||| ||||||||| | ||||||||||||||||||||||||||||| || |||||||||||||||| |||| ||||||||||| ||| |
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|
| T |
17801950 |
gaattaactggggagaaagatattaagctctgcagtttaaataaagcaattcctattattgaaagtaggcttcgtgggagaaaaattctattgattctgg |
17802049 |
T |
|
| Q |
401 |
atgatgttgacagtttggagcaactaaaagcacttgcaggcgagcttgactggtttggctctggcagcagagttattatcacaacaagggataagcattt |
500 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| || | ||||| |||||||| || || |||||||||||||||||||||||||| |||||||| |
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|
| T |
17802050 |
atgacattgacagtttagagcaactaaaagcacttgccggtggacttgagtggtttggttcaggaagcagagttattatcacaacaagggacaagcattt |
17802149 |
T |
|
| Q |
501 |
gctgcatgtttatggtgttgaaagagtct |
529 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |
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|
| T |
17802150 |
gctgcaggtttatggggttgaaagagtct |
17802178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 17790701 - 17791229
Alignment:
| Q |
1 |
attgggaagatcgttcaagaggtctctaaaaagattaatcatagacctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtga |
100 |
Q |
| |
|
|||| ||||||| ||||| |||| ||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
17790701 |
attgagaagatcattcaaaaggtgtctgagaagattaatcgtagacctttacatgttgctaaataccctgttgggttagagtctcgagtggaaaaagtga |
17790800 |
T |
|
| Q |
101 |
actcacttctagaagctgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaa |
200 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
17790801 |
actcgcttctagaagttgaatcaaatgagggggttcacatggtggggatttatggaatgggtgggttaggtaaaacaacacttgcatgtgctgtatacaa |
17790900 |
T |
|
| Q |
201 |
ttgcattgctgatcaatttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtacaactacaggagatgcttcttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| | || |||||||||||||| ||||| |||||||||||| || ||||||||||||||| | |
|
|
| T |
17790901 |
ttgcattgctgatcaatttgatagtctttgttttcttgctaatgttagagaaaattcaatgaagcatgggttggtacatctccaggagatgcttcttcat |
17791000 |
T |
|
| Q |
301 |
gaatttactgggaagaacgatattaagttttgcagtttaaataaagcaattcctattatcgagagtaggcttcgtgggaaaaaagttctattgattttgg |
400 |
Q |
| |
|
||||| || | |||| ||| |||||| |||||||||||||||| | || |||||||| | |||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
17791001 |
gaattaggtgaggagaaagatcataagttgtgcagtttaaataaaggagtttctattatcaaaagtaggcttcatggaaaaaaaattctattgattttgg |
17791100 |
T |
|
| Q |
401 |
atgatgttgacagtttggagcaactaaaagcacttgcaggcgagcttgactggtttggctctggcagcagagttattatcacaacaagggataagcattt |
500 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || || |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17791101 |
atgatgttaacagtttggagcaactaaaagcacttgctggtgaacttgactggtttggttcgggcagcagagttattataacaacaagggataagcattt |
17791200 |
T |
|
| Q |
501 |
gctgcatgtttatggtgttgaaagagtct |
529 |
Q |
| |
|
| ||||||||||| ||||||||||||||| |
|
|
| T |
17791201 |
gttgcatgtttatcgtgttgaaagagtct |
17791229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 17817586 - 17817977
Alignment:
| Q |
1 |
attgggaagatcgttcaagaggtctctaaaaagattaatcatagacctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtga |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
17817586 |
attgggaagatcgttcaaaagatctctaaaaagattaatcgtagacctttacatgttgctaaataccatgttgggttagagtctcgagtgcaaaaagtga |
17817685 |
T |
|
| Q |
101 |
actcacttctagaagctgaatcaaatgagggggtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgcatgtgctgtatacaa |
200 |
Q |
| |
|
|||| |||||||||| ||||||| ||||| || | ||||| ||||||| ||| ||||||||||| || |||||| | |||||||||||||||||||| |
|
|
| T |
17817686 |
actcgcttctagaagttgaatcagatgagaaagttaaaatggtagggatttttggtatgggtgggttgggtaaaacagcacttgcatgtgctgtatacaa |
17817785 |
T |
|
| Q |
201 |
ttgcattgctgatcaatttgatagtttctgttttcttggtgatattagagaaaattcactgaagtgtgggttggtacaactacaggagatgcttcttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |||| |||||||||||||| |||| |||||||||||||| |||||||| |||||| | |
|
|
| T |
17817786 |
ttgcattgctgatcaatttgatagtctttgttttcttgctgatgttagagaaaattcaaagaagcatgggttggtacaacgccaggagattcttcttcat |
17817885 |
T |
|
| Q |
301 |
gaatttactgggaagaacgatattaagttttgcagtttaaataaagcaattcctattatcgagagtaggcttcgtgggaaaaaagttctatt |
392 |
Q |
| |
|
||||| | | |||| ||| |||| || ||||||||||||| || |||| |||| ||| | |||||||||| | |||||||| ||||||| |
|
|
| T |
17817886 |
gaattagcatgagagaaagatcttaatttgtgcagtttaaatagaggaatttctatcatcaaaagtaggcttcataggaaaaaaattctatt |
17817977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 16440691 - 16440753
Alignment:
| Q |
46 |
cctttacatgttgctaaataccctattgggttagagtctcgagtgcgaaaagtgaactcactt |
108 |
Q |
| |
|
||||||||||||||||| |||||| |||| || ||||||||||||| |||| ||||||||| |
|
|
| T |
16440691 |
cctttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcactt |
16440753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 26656605 - 26656646
Alignment:
| Q |
48 |
tttacatgttgctaaataccctattgggttagagtctcgagt |
89 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
26656605 |
tttacatgttgccaaataccctgttggattagagtctcgagt |
26656646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 26762576 - 26762617
Alignment:
| Q |
48 |
tttacatgttgctaaataccctattgggttagagtctcgagt |
89 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
26762576 |
tttacatgttgccaaataccctgttggattagagtctcgagt |
26762617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 29843444 - 29843392
Alignment:
| Q |
133 |
gtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgc |
185 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |
|
|
| T |
29843444 |
gtccagatggtggggatttatggaattggtggattgggtaaaacaacacttgc |
29843392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 29845921 - 29845869
Alignment:
| Q |
133 |
gtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgc |
185 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |
|
|
| T |
29845921 |
gtccagatggtggggatttatggaattggtggattgggtaaaacaacacttgc |
29845869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 2126 - 2074
Alignment:
| Q |
133 |
gtccacatggtggggatttatggaatgggtgggttaggaaaaacaactcttgc |
185 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |
|
|
| T |
2126 |
gtccagatggtggggatttatggaattggtggattgggtaaaacaacacttgc |
2074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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