View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_2 (Length: 795)
Name: NF3002_low_2
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 10 - 756
Target Start/End: Complemental strand, 40806413 - 40805667
Alignment:
| Q |
10 |
catcatcaacagaatcaacatgaacaacactagaagatctcaacaatgatgaaactggtgtagctgatctaatcaaatcattgtgatgtgaacttttagc |
109 |
Q |
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| T |
40806413 |
catcatcaacagaatcaacatgaacaacactagaagatctcaacaatgatgaaactggtgtagctgatctaatcaaatcattgtgatgtgaacttttagc |
40806314 |
T |
|
| Q |
110 |
acgaacgagaagtgcaccaattccattaggcttaagaacacgttcaacctcaagaacaagcaaagcaggcacagaaaccttatcaaggtccctagacaaa |
209 |
Q |
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| T |
40806313 |
acgaacgagaagtgcaccaattccattaggcttaagaacacgttcaacctcaagaacaagcaaagcagggacagaaaccttatcaaggtccctagacaaa |
40806214 |
T |
|
| Q |
210 |
acgaaatcaaatgaagaatcttgataatctagctcataaacgatattcttcatcttgagggagaaaaaacggttggtataaacaccactaacagttgaaa |
309 |
Q |
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| T |
40806213 |
acgaaatcaaatgaagaatcttgataatctagctcataaacgatattcttcatcttgagggagaaaaaacggttggtataaacaccactaacagttgaaa |
40806114 |
T |
|
| Q |
310 |
agcccaaccgtttcattgctttaacagccattgaagaaccttcaccaacacaaagggtatttgcttcacagttcaaaaactgcttacccattaactcagt |
409 |
Q |
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| T |
40806113 |
agcccaactgtttcattgctttaacagccattgaagaaccttcaccaacacaaagggtatttgcttcacagttcaaaaactgcttacccattaactcagt |
40806014 |
T |
|
| Q |
410 |
gaccacattcactgtcaagttaacgtctttttcgcaattaatcgaaccccagattcgattctgaaagaaatacgaagtggggtttgaagtgacgttgttt |
509 |
Q |
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| T |
40806013 |
gaccacattcactgtcaagttaacgtctttttcgcaattcatggaaccccagattcgattctgaaagaaatacgaagtggggtttgaagtgacgttgttt |
40805914 |
T |
|
| Q |
510 |
tctaaatctgcaaaacagttcaaatttgatgcaaaactttccaaatcatagtttgataaagcgcgaagaagcgcaatcattgaaatggtagctgcaagca |
609 |
Q |
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| T |
40805913 |
tctaaatatgcaaaacagttcaaatttgatgcaaaactttccaaatcatagtttgataaagcgcgaagaagcgcaatcattgaaatggtagctgcaagca |
40805814 |
T |
|
| Q |
610 |
cgattgatcgaaagaacaagcgtcgaatcgttgacccattaaggatctggaaattcaggatcttcgtatccatgannnnnnnnngcaagagattagaaca |
709 |
Q |
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| T |
40805813 |
cgattgatcgaaagaacaagcgtcgaatcgttgacccattaaggatctggaaattcaggatcttcgtatccatga-atttttttgcaagagattagaaca |
40805715 |
T |
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| Q |
710 |
gaagggttgtttgaattagtc-aaaaagacaagatttttgagaaattt |
756 |
Q |
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| T |
40805714 |
gaagggttgtttgaattagtcaaaaaagacaagatttttgagaaattt |
40805667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 268 - 756
Target Start/End: Complemental strand, 22552204 - 22551721
Alignment:
| Q |
268 |
gggagaaaaaacggttggtataaacaccactaacagttgaaaagcccaaccgtttcattgctttaacagccattgaagaaccttcaccaacacaaagggt |
367 |
Q |
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||||||| |||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||| |
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| T |
22552204 |
gggagaagaaacggttggtataaacaccac--acatttgaaaaacccaattgtttcattgctttatcagcccttgaagaaccttcaccaacacaaatggt |
22552107 |
T |
|
| Q |
368 |
atttgcttcacagttcaaaaactgcttacccattaactcagtgaccacattcactgtcaagttaacgtctttttcgcaattaatcgaaccccagattcga |
467 |
Q |
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| T |
22552106 |
atttgcttcacaattcaaaaactctttacccaccaattcagtgaccacattcactgtcaagttaccgtctttttcgcaattcattgaaccccagattcaa |
22552007 |
T |
|
| Q |
468 |
ttctgaaagaaatacgaagtggggtttgaagtgacgttgttttctaaatctgcaaaacagttcaaatttgatgcaaaactttccaaatcatagtttgata |
567 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||| | |||||||| |||||||||| |
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| T |
22552006 |
ttctcaaagaaatacgatttggggtttgaagtgacgttgttttctaaatttgcaaaacagttcaagtttgaggc-aaattctccaaatcttagtttgata |
22551908 |
T |
|
| Q |
568 |
aagcgcgaagaagcgcaatcattgaaatggtagctgcaagcacgattga--tcgaaagaacaagcgtcgaatcgttgacccattaaggatctggaaattc |
665 |
Q |
| |
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|||||||||||||||||||| |||| |||||||| ||| || |||||| ||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
22551907 |
aagcgcgaagaagcgcaatcgttgacatggtagcgacaatcatgattgaacacgaaagaacaagcctcgaatcgttgacccattcaggatctgaaaatta |
22551808 |
T |
|
| Q |
666 |
aggatcttcgtatccatgannnnnnnnngcaagagattagaacagaagggttgtttgaattagtcaaaaagacaagatttttgagaaattt |
756 |
Q |
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||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
22551807 |
aggatcttcgtatccatgaattttt----caagagcttagaagagaagggttgtttgaattagtcaaagagacaagatttttgaaaaattt |
22551721 |
T |
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