View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_20 (Length: 536)

Name: NF3002_low_20
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_20
NF3002_low_20
[»] chr8 (10 HSPs)
chr8 (14-523)||(1795319-1795828)
chr8 (15-485)||(6231692-6232166)
chr8 (17-485)||(5185184-5185654)
chr8 (14-156)||(5195175-5195308)
chr8 (17-162)||(5198773-5198908)
chr8 (17-144)||(5177742-5177860)
chr8 (244-289)||(5058903-5058948)
chr8 (245-292)||(5198196-5198243)
chr8 (118-156)||(33861527-33861565)
chr8 (193-242)||(21112654-21112703)
[»] chr7 (4 HSPs)
chr7 (17-485)||(5178876-5179344)
chr7 (192-242)||(22845044-22845094)
chr7 (194-242)||(42233252-42233300)
chr7 (193-242)||(21068983-21069032)
[»] scaffold0003 (1 HSPs)
scaffold0003 (192-242)||(184069-184119)
[»] chr6 (2 HSPs)
chr6 (192-242)||(18857796-18857846)
chr6 (192-242)||(30882566-30882616)
[»] chr5 (5 HSPs)
chr5 (192-242)||(3691234-3691284)
chr5 (192-242)||(3875503-3875553)
chr5 (192-242)||(17870566-17870616)
chr5 (193-242)||(10026238-10026287)
chr5 (193-242)||(25541703-25541752)
[»] chr2 (7 HSPs)
chr2 (192-242)||(27510634-27510684)
chr2 (193-242)||(27193733-27193782)
chr2 (193-242)||(27843547-27843596)
chr2 (118-156)||(27194264-27194302)
chr2 (118-156)||(27844078-27844116)
chr2 (118-156)||(35611435-35611473)
chr2 (118-156)||(39441471-39441509)
[»] chr1 (3 HSPs)
chr1 (192-242)||(2330427-2330477)
chr1 (192-242)||(48774293-48774343)
chr1 (201-242)||(36208486-36208527)
[»] scaffold1139 (1 HSPs)
scaffold1139 (192-242)||(2275-2325)
[»] scaffold0356 (3 HSPs)
scaffold0356 (192-242)||(15958-16008)
scaffold0356 (117-156)||(15437-15476)
scaffold0356 (192-242)||(16877-16927)
[»] chr4 (3 HSPs)
chr4 (192-242)||(14146459-14146509)
chr4 (193-242)||(55558033-55558082)
chr4 (118-156)||(31921507-31921545)
[»] chr3 (6 HSPs)
chr3 (192-242)||(11369899-11369949)
chr3 (193-242)||(10001668-10001717)
chr3 (193-242)||(27275656-27275705)
chr3 (118-156)||(41763509-41763547)
chr3 (193-242)||(10111860-10111909)
chr3 (193-242)||(10245545-10245594)
[»] scaffold0262 (1 HSPs)
scaffold0262 (193-242)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (193-242)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (193-242)||(27629-27678)
scaffold0118 (193-242)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (193-242)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (193-242)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (194-242)||(187804-187852)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Complemental strand, 1795828 - 1795319
Alignment:
Q  14 gagaatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  1795828 gagaatattgatttcaagaccatgctagaattgttgccaaatggagaatttttttttagctttatgttagaattttaatgttgctgacgctgccataaac 1795729  T
Q  114 tcatagacatgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795728 tcatagacatgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgt 1795629  T
Q  214 agagatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795628 agagatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcat 1795529  T
Q  314 ttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctcaccatgatgcaatgatccctttaagttg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795528 ttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctcaccatgatgcaatgatccctttaagttg 1795429  T
Q  414 attttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttgaacaagtattttctaccttcattg 513  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795428 attttttctacaaaaactgcatgaccttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttgaacaagtattttctaccttcattg 1795329  T
Q  514 atgtaaattc 523  Q
    ||||||||||    
T  1795328 atgtaaattc 1795319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 6231692 - 6232166
Alignment:
Q  15 agaatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||| ||||||||    
T  6231692 agaatattgatttcaagaccatgctagaattgttgccaaatggaggaaaaatt---agctttatgttagaattttaatgttgctgacgctgtcataaact 6231788  T
Q  115 catagacatgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatata-cactacggaaaatgatgaacggtatcgt 213  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||| ||||| |||||||  ||| |||||||||    
T  6231789 catagacatgtttttactttgaagtttgatattacctcttaaatgcatgatgacacatttgttatgatataacactatggaaaattctgagcggtatcgt 6231888  T
Q  214 agagatagtaactctta--gtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgc 311  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  6231889 agagttagtagctcttatagtttgttctttattattggctttacttatttgtagttatttattatcttccaatgattgataactagttattgtgattcgc 6231988  T
Q  312 atttcgcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatcccttt 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||  |   ||||| |||||||||     
T  6231989 atttcgcatcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcagtgatcccttc 6232088  T
Q  408 aagttgattttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct 485  Q
    ||||||||||||||||||||| ||||||||||||  | || | ||| ||| || ||||| ||||||||||||||||||    
T  6232089 aagttgattttttctacaaaagctgcatgatctttgtatcaatgggcattgctaccttgcaatgttttcaagctgtct 6232166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 5185184 - 5185654
Alignment:
Q  17 aatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactca 116  Q
    |||||||| |||||||||||||||||||||||||||| || ||||         |||||| ||||||| ||||||||||||||| |||| ||||||||||    
T  5185184 aatattgacttcaagaccatgctagaattgttgccaattgaagaagaaatt---agctttgtgttagagttttaatgttgctgatgctgtcataaactca 5185280  T
Q  117 tagacatgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtaga 216  Q
      ||||||||||| |||  ||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||    
T  5185281 gtgacatgtttttacttcaaagtttgatgttacctcttaaatgcacaatgacacatttgttttgatatacactatggaaaatgctgaacggtatcgtaga 5185380  T
Q  217 gatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttc 316  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  5185381 gttagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttattgtgattcgcatttt 5185480  T
Q  317 gcttcttccaagcaaggaccttc-tgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagt 411  Q
    || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||  ||  |   ||||| ||||||||||||||    
T  5185481 gcatcttccaagcaaggaccttcttgctgatttccattttaccataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagt 5185580  T
Q  412 tgattttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct 485  Q
    ||||||||||||||||| ||||||||||||| | || | ||| ||| || ||||| ||||||||||||||||||    
T  5185581 tgattttttctacaaaagctgcatgatcttcgtatcaatgggcattgctaccttgcaatgttttcaagctgtct 5185654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 5195175 - 5195308
Alignment:
Q  14 gagaatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaac 113  Q
    |||||||||||||||||||||||||||||| ||||||||| ||  |||         | |||||||||||||||||||||||      |||| ||| |||    
T  5195175 gagaatattgatttcaagaccatgctagaactgttgccaactgatgaa---aaaattaactttatgttagaattttaatgtt------gctgtcatcaac 5195265  T
Q  114 tcatagacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||||||| | |||||||||||| |||||||||||    
T  5195266 tcatagacatgtttttacgttgaagtttgattttacctcttaa 5195308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 5198908 - 5198773
Alignment:
Q  17 aatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactca 116  Q
    ||||||||||||||||||||||||||| ||||||||| ||  |||         | ||||||||||||||||||||||||||| |      || ||||||    
T  5198908 aatattgatttcaagaccatgctagaactgttgccaactgatgaaaaaatt---aactttatgttagaattttaatgttgctgtc------atcaactca 5198818  T
Q  117 tagacatgttttttctttgaagtttgatgttacctcttaaatgcat 162  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||    
T  5198817 tagacatgtttttactttgaagtttgattttacctc-taaatgcat 5198773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 5177742 - 5177860
Alignment:
Q  17 aatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactca 116  Q
    |||||||| |||||||||||||||||||||||||||| |||||||         || ||||||||||||||||||||||      |||| ||||| ||||    
T  5177742 aatattgacttcaagaccatgctagaattgttgccaattggagaa---aaaattagttttatgttagaattttaatgtt------gctgtcataatctca 5177832  T
Q  117 tagacatgttttttctttgaagtttgat 144  Q
    ||||| |||||||  |||||||||||||    
T  5177833 tagacgtgtttttattttgaagtttgat 5177860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 5058948 - 5058903
Alignment:
Q  244 tattggctttacttatttgtagttctttattatcttccaatgattg 289  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  5058948 tattagctatacttatttgtagttctttattatcttccaatgattg 5058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 5198243 - 5198196
Alignment:
Q  245 attggctttacttatttgtagttctttattatcttccaatgattgata 292  Q
    ||||| ||| |||||||| |||||||||||||||||||||||| ||||    
T  5198243 attggatttgcttatttgcagttctttattatcttccaatgatcgata 5198196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 33861565 - 33861527
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  33861565 agacatgtttttactttgaagttttatgttacctcttaa 33861527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 21112703 - 21112654
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||| ||||| |||||||||||||||| |||||||    
T  21112703 gaaaatgttgaatggtatcatagagttagtaactcttagttttttcttta 21112654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 5178876 - 5179344
Alignment:
Q  17 aatattgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactca 116  Q
    |||||||||||||||||||| |||||||||||||||| |||||||         |||||||||||||||||||||||||| |||||||| ||||||||||    
T  5178876 aatattgatttcaagaccattctagaattgttgccaattggagaaaaattt---agctttatgttagaattttaatgttgttgacgctgtcataaactca 5178972  T
Q  117 tagacatgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtaga 216  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||  ||||| |||||||| ||||  ||||||||||    
T  5178973 tagacatgtttttacttcgaagtttgatgttacctcttaaatgcatgatgccacatttgttttgata--cactatggaaaatgctgaatagtatcgtaga 5179070  T
Q  217 gatagtaactcttagtttgttctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttc 316  Q
    | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| | |||||| ||||||    
T  5179071 gttagtaactcttagtttgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactacttattatgattcacatttc 5179170  T
Q  317 gcttcttccaagcaaggaccttctgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagtt 412  Q
    || |||||||| ||||||||||||||||||||||||||   || |||||||||||||||||||||| ||  ||  |   |||||||||||||||||||||    
T  5179171 gcatcttccaaacaaggaccttctgctgatttccattttgtcagaacatttttggatataactcatttccaacttctccatgcaatgatccctttaagtt 5179270  T
Q  413 ga-ttttttctacaaaaactgcatgatcttcatgtctacggggattactgccttgtaatgttttcaagctgtct 485  Q
    || |||||||||||||| ||||||||||||| | |||| ||| |||||| ||||| ||||||||||||||||||    
T  5179271 gatttttttctacaaaagctgcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtct 5179344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 22845044 - 22845094
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  22845044 ggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 42233252 - 42233300
Alignment:
Q  194 aaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  42233252 aaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 42233300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 21069032 - 21068983
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| | |||||||||| |||||||||||||||| |||||||    
T  21069032 gaaaatgttgaatgatatcgtagagttagtaactcttagttttttcttta 21068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 184069 - 184119
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  184069 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 184119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 18857796 - 18857846
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  18857796 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 18857846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 30882566 - 30882616
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  30882566 ggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 30882616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 3691234 - 3691284
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  3691234 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3691284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 3875553 - 3875503
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  3875553 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3875503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 17870616 - 17870566
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| ||| |||||||| ||||||||||||||||||||||||    
T  17870616 ggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 17870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 10026238 - 10026287
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  10026238 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10026287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 25541752 - 25541703
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  25541752 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 25541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 27510634 - 27510684
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  27510634 ggaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27510684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 27193733 - 27193782
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  27193733 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 27843547 - 27843596
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  27843547 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 27194264 - 27194302
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  27194264 agacatgtttttactttgaagttttatgttacctcttaa 27194302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 27844078 - 27844116
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  27844078 agacatgtttttactttgaagttttatgttacctcttaa 27844116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 35611435 - 35611473
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  35611435 agacatgtttttactttgaagttttatgttacctcttaa 35611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 39441509 - 39441471
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  39441509 agacatgtttttactttgaagttttatgttacctcttaa 39441471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 2330427 - 2330477
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  2330427 ggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 2330477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 48774343 - 48774293
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| | || |||||||||||| ||||||||||||||||||||||||    
T  48774343 ggaaaatgtttaatggtatcgtagagttagtaactcttagtttgttcttta 48774293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 36208486 - 36208527
Alignment:
Q  201 tgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  36208486 tgaacggtatcatagagttagtaactcttagtttgttcttta 36208527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 2275 - 2325
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| | |||||||||| ||||||||||||||||||||||||    
T  2275 ggaaaatgttgaatgatatcgtagagttagtaactcttagtttgttcttta 2325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 16008 - 15958
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| | || |||||||||||| ||||||||||||||||||||||||    
T  16008 ggaaaatgcttaatggtatcgtagagttagtaactcttagtttgttcttta 15958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 15476 - 15437
Alignment:
Q  117 tagacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  15476 tagacatgtttttactttgaagttttatgttacctcttaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 16927 - 16877
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| ||| |||||||| |||||||||||||||||| |||||    
T  16927 ggaaaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 16877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 14146509 - 14146459
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||    
T  14146509 ggaaaatgctgaatggtatcggagagttagtaactcttagtttgttcttta 14146459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 55558082 - 55558033
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  55558082 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 55558033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 31921507 - 31921545
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  31921507 agacatgtttttactttgaagttttatgttacctcttaa 31921545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 11369899 - 11369949
Alignment:
Q  192 ggaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||||||||    
T  11369899 ggaaaatgctgaatggtatcgtggagttagtaactcttagtttgttcttta 11369949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 10001668 - 10001717
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  10001668 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 27275656 - 27275705
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  27275656 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 41763547 - 41763509
Alignment:
Q  118 agacatgttttttctttgaagtttgatgttacctcttaa 156  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  41763547 agacatgtttttactttgaagttttatgttacctcttaa 41763509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 10111860 - 10111909
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| || ||||||||||||| |||||||    
T  10111860 gaaaatgttgaatggtatcgtagagttattaactcttagttttttcttta 10111909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 10245545 - 10245594
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||  |||||||||||||||| |||||||    
T  10245545 gaaaatgttgaatggtatcgtagatttagtaactcttagttttttcttta 10245594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 20264 - 20313
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  20264 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 20313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 13253 - 13204
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  13253 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 13204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 27678 - 27629
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| |||||||||||||||| |||||||    
T  27678 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 24486 - 24437
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| ||||| |||||| |||||||||||||||| |||||||    
T  24486 gaaaatgttgaatggtattgtagagttagtaactcttagttttttcttta 24437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 141222 - 141174
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  141222 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 318689 - 318641
Alignment:
Q  193 gaaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    ||||||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  318689 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 318641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 187804 - 187852
Alignment:
Q  194 aaaatgatgaacggtatcgtagagatagtaactcttagtttgttcttta 242  Q
    |||||| |||| |||||||||||| ||| |||||||||||| |||||||    
T  187804 aaaatgttgaatggtatcgtagagttagcaactcttagttttttcttta 187852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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