View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_21 (Length: 532)
Name: NF3002_low_21
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 11384416 - 11384783
Alignment:
| Q |
9 |
agcaaaggtttgtcaggttccatctcgtacattcacgggtgtatgcgtcccgctcgactttcctttttgtgactctgactgtaagaaaaaagagcacgct |
108 |
Q |
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| T |
11384416 |
agcaaaggtttgtcaggttccatctcgtacattcacgggtgtatgcgtcccgctcgactttcctttttgtgactctgattgtaagaaaaaagagcacgca |
11384515 |
T |
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| Q |
109 |
atcaagggcaagtgcgtggccttcagttgttactgcattaaaggatgttaaattaaattcatccaaaaagactaaaatctatcaataaataacatgcaga |
208 |
Q |
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| T |
11384516 |
atcaagggcaagtgcgtggccttcagttgttactgcattaaaggatgttaaattaaattcatcc-aaaagactaaaatctatcaataaataacatgcaga |
11384614 |
T |
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| Q |
209 |
atagctagcactgcatctatgactctttgaatatgtgtctgtacattaatcaaaaagaaaattatgtgtttacagctcgttgtgcatgtgttagttattc |
308 |
Q |
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| T |
11384615 |
atagctagcactgcatctatgactctttgaatatgtgtttgtacattaatcaaaaagaaaattatgtgtttacagctcgttgtgcatgtattagttattc |
11384714 |
T |
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| Q |
309 |
actttaacatatcaagtttacaaactatt-cattctatgtttaacaagaactagaattaaccattaactt |
377 |
Q |
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| T |
11384715 |
actttaacatatcaagtttacaaactattgcattat-tgtttaacaagaactagaattaaccattaactt |
11384783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 28020793 - 28020703
Alignment:
| Q |
235 |
ttgaatatgtgtctgtacattaatcaaaaagaaaattatgtgtttacagctcg-ttgtgcatgtgttagttattcactttaacatatcaagtttac |
329 |
Q |
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| T |
28020793 |
ttgaatatgtgt--gtactttaatcaaaaagagaattatgtgtttac---tagattgtgcatgtgttagttattcactttatcatatgaaatttac |
28020703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Complemental strand, 28020591 - 28020549
Alignment:
| Q |
444 |
atttatacacccaaaagcaattttgacttaaaatatccaaacaa |
487 |
Q |
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| T |
28020591 |
atttataaacccaaaagcaattt-gacttaaaatatccaaacaa |
28020549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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