View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_23 (Length: 527)

Name: NF3002_low_23
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_23
NF3002_low_23
[»] chr5 (3 HSPs)
chr5 (18-501)||(6813531-6814012)
chr5 (454-501)||(6806781-6806828)
chr5 (351-458)||(6806496-6806604)
[»] chr4 (3 HSPs)
chr4 (320-394)||(29391148-29391222)
chr4 (319-391)||(8258820-8258891)
chr4 (319-391)||(8272238-8272309)
[»] chr2 (1 HSPs)
chr2 (259-315)||(34881776-34881832)
[»] chr3 (2 HSPs)
chr3 (265-365)||(39736639-39736734)
chr3 (326-395)||(41417131-41417200)
[»] chr7 (1 HSPs)
chr7 (319-388)||(19267374-19267443)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 6813531 - 6814012
Alignment:
Q  18 actaaaagatgaaattaaaagatgaaggagagataaattttgatcacgatattatgtaatcaaaattgcatgtatgcactcttaccgtcaaaagatttct 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813531 actaaaagatgaaattaaaagatgaatgagagataaattttgatcacgatattatgtaatcaaaattgcatgtatgcactcttaccgtcaaaagatttct 6813630  T
Q  118 agttgtccgattaaggttggaggattctttattttaggatggagtttatcatannnnnnnatgaatcttaccccgnnnnnnnnnnnnnngaatcttaccc 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||                 ||||||||||    
T  6813631 agttgtccgattaaggttggaggattctttattttacgatggagtttatcatatttttttatgaatcttaccc--tttttttttttttttaatcttaccc 6813728  T
Q  218 ttctaaagtgagtaattcactttatagcgtacacatatgtgcaatatcaatcattaattaacatattaaaggtagatattatagatatagaataacaaat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6813729 ttctaaagtgagtaattcactttatagcgtacacatatgtgcaatatccatcattaattaacatattaaaggtagaaattatagatatagaataacaaat 6813828  T
Q  318 gaaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttgcccatatattagacggatttctttta 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6813829 gaaattatgagtttgttacaataacaaccattaattttcttaatttacattttatccactttagatgatccttgcccatatattatacggatttctttta 6813928  T
Q  418 ttcttttttgttcggatagataattctttagattatacatagaaatcaaattttattcaccacaactatattacttttgaattt 501  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  6813929 ttcttttttgtttggatagataattctttagattatacatagaaatcaaattttattcaccccaactattttatttttgaattt 6814012  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 501
Target Start/End: Original strand, 6806781 - 6806828
Alignment:
Q  454 acatagaaatcaaattttattcaccacaactatattacttttgaattt 501  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  6806781 acatagaaatcaaattttattcaccccaactatattatttttgcattt 6806828  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 458
Target Start/End: Original strand, 6806496 - 6806604
Alignment:
Q  351 attttcttaatttacattttatccactttagatgatccttgcccatatattagacggatttct-tttattcttttttgttcggatagataattctttaga 449  Q
    ||||| |||||||||| |||||  ||||| || ||||||||||||| ||||| ||    || | |||||||||||||||| | |||||| ||||||||||    
T  6806496 atttttttaatttacactttatatactttggaggatccttgcccatttattatacaatcttttatttattcttttttgtttgcatagatgattctttaga 6806595  T
Q  450 ttatacata 458  Q
    ||| |||||    
T  6806596 ttagacata 6806604  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 29391222 - 29391148
Alignment:
Q  320 aattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttgccc 394  Q
    |||||||||||||||||||||||| || | |||||||||| |||||| ||||  ||||||||| || ||||||||    
T  29391222 aattatgagtttgttacaataacaaccctcaattttcttactttacactttactcactttagaggacccttgccc 29391148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 8258891 - 8258820
Alignment:
Q  319 aaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttg 391  Q
    |||||||||| |||||||||||||| || || | ||||| | |||||  ||||||||||||||| ||||||||    
T  8258891 aaattatgagcttgttacaataacaacctttga-tttctcattttaccctttatccactttagaggatccttg 8258820  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 8272309 - 8272238
Alignment:
Q  319 aaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttg 391  Q
    |||||||||| |||||||||||||| || || | ||||| | |||||  ||||||||||||||| ||||||||    
T  8272309 aaattatgagcttgttacaataacaacctttga-tttctcattttaccctttatccactttagaggatccttg 8272238  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 34881832 - 34881776
Alignment:
Q  259 caatatcaatcattaattaacatattaaaggtagatattatagatatagaataacaa 315  Q
    |||||||||||||||||||||| ||||||| || |||||||||||| | ||||||||    
T  34881832 caatatcaatcattaattaacaaattaaagataaatattatagatacataataacaa 34881776  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 39736639 - 39736734
Alignment:
Q  265 caatcattaattaacatattaaaggtagatattatagatatagaataacaaatgaaattatgagtttgttacaataacagccattaattttcttaattta 364  Q
    ||||| |||||||||| ||||||| | ||||||||||||||| ||||||     |||  ||||||||||||| |||||| || || ||||||||| ||||    
T  39736639 caatctttaattaacaaattaaagatcgatattatagatatataataac-----aaaccatgagtttgttaccataacaacctttgattttcttacttta 39736733  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 41417200 - 41417131
Alignment:
Q  326 gagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatccttgccca 395  Q
    |||||||||||||||||| || || ||||||||| |||||| |||   | ||||||| ||||||||||||    
T  41417200 gagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggatccttgccca 41417131  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 19267374 - 19267443
Alignment:
Q  319 aaattatgagtttgttacaataacagccattaattttcttaatttacattttatccactttagatgatcc 388  Q
    |||| |||||||||||| ||||||| || || ||||||| |||||||| ||||  ||||||||| |||||    
T  19267374 aaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggatcc 19267443  T

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