View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_28 (Length: 486)

Name: NF3002_low_28
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_28
NF3002_low_28
[»] chr1 (2 HSPs)
chr1 (7-481)||(7099088-7099562)
chr1 (7-481)||(7581684-7582158)
[»] chr5 (17 HSPs)
chr5 (7-481)||(17982567-17983048)
chr5 (303-444)||(30521883-30522024)
chr5 (303-444)||(30562223-30562364)
chr5 (269-481)||(30475045-30475257)
chr5 (322-439)||(30060075-30060192)
chr5 (379-435)||(29853021-29853077)
chr5 (322-466)||(30242652-30242796)
chr5 (302-445)||(30338785-30338928)
chr5 (302-445)||(30483104-30483247)
chr5 (7-95)||(30060422-30060510)
chr5 (382-466)||(30713762-30713846)
chr5 (7-95)||(30749696-30749784)
chr5 (379-437)||(30749351-30749409)
chr5 (388-445)||(29871886-29871943)
chr5 (379-439)||(30435528-30435588)
chr5 (399-466)||(30677525-30677592)
chr5 (322-466)||(30206204-30206348)
[»] chr4 (2 HSPs)
chr4 (22-438)||(13616315-13616723)
chr4 (379-444)||(20296928-20296993)
[»] chr7 (1 HSPs)
chr7 (323-439)||(26707050-26707166)
[»] chr3 (1 HSPs)
chr3 (379-435)||(25294206-25294262)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 7099562 - 7099088
Alignment:
Q  7 cttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagtttcaactatccgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099562 cttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagtttcaactatccgc 7099463  T
Q  107 gtccgatattatgggaagaggattccttcacaaatgcagaatcattgcgaacattgtataacccatattattttcgatttcgctttggaagtttcatacc 206  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7099462 gtccgatattattggaagaggattccttcacaaatgcagaatcattgcgaacattgtataacccagattattttcgatttcgctttggaagtttcatacc 7099363  T
Q  207 aataaagcacactcttcgggttttgcgaacagacacttttgaattctcattactcggtagtctaattcatctgaggtatttagagcttcacaattttgac 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7099362 aataaagcacactcttcgggttttgcgaacagacacttttgaattctcattactcggtagtctaattcatctgaggtatttagagcttcacaattttggc 7099263  T
Q  307 atagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttgtctt 406  Q
    ||| || |||||||  ||||| |||||| ||||||||  ||| |||||||||| |||  ||  ||| |||| |||||||||||||| |||||||||||||    
T  7099262 ataaaacccttccctaactcagtttataacttacaaagattggaaatcttgaagttgcgagcctttaccaaactgagttgtcttccagaacacttgtctt 7099163  T
Q  407 gcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttcgtcatgttggaaaat 481  Q
    ||||||||||||||||||||||| ||||||||| |||| |||  |||||||||||||||| |||  |||||||||    
T  7099162 gcttacaaaatcttagacatttaatcattgaaggttgtaattcattgtctcgcatgtttcctcacattggaaaat 7099088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 481
Target Start/End: Original strand, 7581684 - 7582158
Alignment:
Q  7 cttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagtttcaactatccgc 106  Q
    ||||||| |||||||| || ||||||||||||||||||||| |||| || | |||| ||  ||||||||||||| |||||||||||||||| || |||||    
T  7581684 cttgctcgatcagtagtggtgcaagaatgtatggttttagagaatgaatgtttgacaaatatgtcaaaaagcacccatcatattagtttcatctctccgc 7581783  T
Q  107 gtccgatattatgggaagaggattccttcacaaatgcagaatcattgcgaacattgtataacccatattattttcgatttcgc----tttggaagtttca 202  Q
     |||  ||| ||  ||||||| |||||||||||| |  ||||| ||||||||||||||| | | |  |||||    |||| |     | ||  | ||||     
T  7581784 atccagtatcattagaagaggtttccttcacaaaagtggaatcgttgcgaacattgtatcaactagcttatt----attttgagaagtatgacaatttct 7581879  T
Q  203 taccaataaagcacactcttcgggttttgcgaacagacacttttgaattctcattactcggtagtctaattcatctgaggtatttagagcttcacaattt 302  Q
    ||||| ||||| |||| ||||| ||||||  ||||  |||||| || || |||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  7581880 taccagtaaagtacacccttcgcgttttgaaaacaagcactttagagttatcattacttggtagtttaattcatttgaggtatttagagcttcacaattt 7581979  T
Q  303 tgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7581980 tgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttg 7582079  T
Q  403 tcttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttcgtcatgttggaaaat 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7582080 tcttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttcgtcatgttggaaaat 7582158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 17983048 - 17982567
Alignment:
Q  7 cttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagtttcaactatccgc 106  Q
    |||||||||||||||| |||||| |||||| |||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||| |     
T  17983048 cttgctcaatcagtagcggggcatgaatgtgtggttttagagaatgcatctgtgactaacttgtcaaaaagtacacattatattagtttcaaccatctgt 17982949  T
Q  107 gtccgatattatgggaagaggattccttcacaaatgcagaatcattgcgaacattgtat-aacccat-----attattttcgatttcgctttggaagttt 200  Q
    ||||| ||||||  |||||||||||||||| |||  ||||||| ||||||||||| ||| ||| | |     |  |||||| |||  |||||| |||| |    
T  17982948 gtccggtattattagaagaggattccttcaaaaaaccagaatcgttgcgaacattttatcaacactttagagaagattttcaattaagctttgaaagtgt 17982849  T
Q  201 cataccaataaagcacactcttcgggttttgcgaacagacacttttgaattctcattactcggtagtctaattcatctgaggtatttagagcttcacaat 300  Q
    | ||||||||||||| ||||||||||||||  ||||| | ||||| || || |||||||||| |||| |||||||| |||||||||| |||||||||| |    
T  17982848 cttaccaataaagcaaactcttcgggttttaagaacaaagactttagagttatcattactcgttagtttaattcatttgaggtatttggagcttcacagt 17982749  T
Q  301 tttgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacact 400  Q
    ||||| ||| |||  ||||||||||||||||||||||||||||| ||| |||||||||||||||||  | ||| ||| ||||||||||| ||| |||       
T  17982748 tttgagataaaaatattccccgactcaatttatagcttacaaaaattggaaatcttgaaattgaaatctgtttacaaactgagttgtctgccgaaacgtc 17982649  T
Q  401 tgtc-ttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttcgtcatgttggaaaat 481  Q
    |||| ||| ||||||||||||||||||||||||||||||  |||| ||| |||||||| |||||||| |||  |||||||||    
T  17982648 tgtctttgtttacaaaatcttagacatttagtcattgaacgttgttattcgttgtctcacatgtttcctcacattggaaaat 17982567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 30521883 - 30522024
Alignment:
Q  303 tgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttg 402  Q
    ||||||| ||||| | || ||||||||||||||||| |  || ||| ||||||||||| ||||| ||||||| || ||  ||||||| ||||||||||||    
T  30521883 tgacataaaaaccctacctgactcaatttatagcttgcgtaatttggaaatcttgaaactgaaacatttttctaaacttcgttgtctaccggaacacttg 30521982  T
Q  403 tcttgcttacaaaatcttagacatttagtcattgaagattgt 444  Q
     |||||||||||||||| |||||| | || |||||| |||||    
T  30521983 acttgcttacaaaatctcagacatcttgttattgaaaattgt 30522024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 30562223 - 30562364
Alignment:
Q  303 tgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttg 402  Q
    ||||||| ||||| | || ||||||||||||||||| |  || ||| ||||||||||| ||||| ||||||| || ||  ||||||| ||||||||||||    
T  30562223 tgacataaaaaccctacctgactcaatttatagcttgcgtaatttggaaatcttgaaactgaaacatttttctaaacttcgttgtctaccggaacacttg 30562322  T
Q  403 tcttgcttacaaaatcttagacatttagtcattgaagattgt 444  Q
     |||||||||||||||| |||||| | || |||||| |||||    
T  30562323 acttgcttacaaaatctcagacatcttgttattgaaaattgt 30562364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 481
Target Start/End: Complemental strand, 30475257 - 30475045
Alignment:
Q  269 taattcatctgaggtatttagagcttcacaattttgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaaga 368  Q
    |||||||| |||||||||| |||||||   || ||||| |||||||| | || |||||||||||| |||| || || ||| ||||||||||||||||| |    
T  30475257 taattcatttgaggtatttggagcttcgtgatcttgacgtagaaacccttcctgactcaatttatcgcttgcagaaattggaaatcttgaaattgaaata 30475158  T
Q  369 tttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttcgt 468  Q
    ||||   || |||| || ||| ||  |||||||| |||| ||||| ||||| || ||| | ||||||||||||||| |||  |||||| |  |||||| |    
T  30475157 ttttcgaaaactgacttttctaccaaaacacttgacttgtttacagaatctcaggcatcttgtcattgaagattgtaattcattgtcttgtgtgtttcct 30475058  T
Q  469 catgttggaaaat 481  Q
     || |||||||||    
T  30475057 tatattggaaaat 30475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 439
Target Start/End: Complemental strand, 30060192 - 30060075
Alignment:
Q  322 gactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatctta 421  Q
    ||||||||||| | |||||||||  || ||||||||||| | ||||| | |   || ||||||||||| ||  ||| |||| ||||||||||||||||||    
T  30060192 gactcaatttacaacttacaaaaactggaaatcttgaaaataaaagactgtcgtaaactgagttgtctcccaaaacgcttggcttgcttacaaaatctta 30060093  T
Q  422 gacatttagtcattgaag 439  Q
    ||||| ||||||||||||    
T  30060092 gacatatagtcattgaag 30060075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 29853077 - 29853021
Alignment:
Q  379 ctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcatt 435  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||    
T  29853077 ctgagttgtctcccgaaacacttggcttgcttacaaaatcttagacatatagtcatt 29853021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 466
Target Start/End: Original strand, 30242652 - 30242796
Alignment:
Q  322 gactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatctta 421  Q
    ||||||||||| | | || ||||| || ||||||||||| | ||| ||| |   || ||||||||||| ||  |||||||| ||||||||||||||||||    
T  30242652 gactcaatttacaacctaaaaaagctggaaatcttgaaaataaaacattgtcgtaaactgagttgtctcccaaaacacttggcttgcttacaaaatctta 30242751  T
Q  422 gacatttagtcattgaagattgtcatttgttgtctcgcatgtttc 466  Q
    ||||| |||||||| |||| ||||  |  ||||||| ||||||||    
T  30242752 gacatatagtcattaaagaatgtcggtctttgtctctcatgtttc 30242796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 445
Target Start/End: Original strand, 30338785 - 30338928
Alignment:
Q  302 ttgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacactt 401  Q
    ||||||||||||  || ||  |||||||||| | |||||||||  || ||||||||||| | |||  || |   || ||||||||||||||  ||| |||    
T  30338785 ttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataaaacgttgtgataaactgagttgtcttccaaaacgctt 30338884  T
Q  402 gtcttgcttacaaaatcttagacatttagtcattgaagattgtc 445  Q
    | ||||||||||||||||||| ||| ||||||||||||| ||||    
T  30338885 ggcttgcttacaaaatcttaggcatatagtcattgaagaatgtc 30338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 445
Target Start/End: Complemental strand, 30483247 - 30483104
Alignment:
Q  302 ttgacatagaaaccttccccgactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacactt 401  Q
    ||||||||||||  || ||  |||||||||| | |||||||||  || ||||||||||| | ||||| | |   || ||||||||||| ||  ||| |||    
T  30483247 ttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaataaaagactgtcgtaatctgagttgtctcccaaaacgctt 30483148  T
Q  402 gtcttgcttacaaaatcttagacatttagtcattgaagattgtc 445  Q
    | ||||||||||||||||||| ||| ||||||||||||| ||||    
T  30483147 ggcttgcttacaaaatcttaggcatatagtcattgaagaatgtc 30483104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 30060510 - 30060422
Alignment:
Q  7 cttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagttt 95  Q
    |||||||||||||||  ||||||||||||||||  ||| || |||||| |  ||||||  ||||||||||||||||| || ||||||||    
T  30060510 cttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttt 30060422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 30713762 - 30713846
Alignment:
Q  382 agttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttc 466  Q
    ||||| |||||| ||| |||| |||| |||||||||||||||||| ||||||||||||| ||||  |  |||||||| |||||||    
T  30713762 agttgccttccgaaacgcttggcttgtttacaaaatcttagacatatagtcattgaagaatgtcgatctttgtctcgaatgtttc 30713846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 30749784 - 30749696
Alignment:
Q  7 cttgctcaatcagtaggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagttt 95  Q
    |||||||||||||||  ||||||||||||||||  ||| || |||||| |  ||||||  ||||| ||||||||||| |||||||||||    
T  30749784 cttgctcaatcagtaatggggcaagaatgtatgtatttggagaatgcaaacttgactagtttgtcgaaaagcacacaccatattagttt 30749696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 30749409 - 30749351
Alignment:
Q  379 ctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcattga 437  Q
    ||||||||||| ||  ||| |||| ||||||||||||||||||||||| ||||||||||    
T  30749409 ctgagttgtctcccaaaacgcttggcttgcttacaaaatcttagacatatagtcattga 30749351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 29871943 - 29871886
Alignment:
Q  388 cttccggaacacttgtcttgcttacaaaatcttagacatttagtcattgaagattgtc 445  Q
    |||||| ||| |||| |||| |||||||||||||||||| ||||||||||||| ||||    
T  29871943 cttccgaaacgcttggcttgtttacaaaatcttagacatatagtcattgaagaatgtc 29871886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 30435588 - 30435528
Alignment:
Q  379 ctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcattgaag 439  Q
    ||||||||||| ||  ||| ||||  |||||||||||||||||||||| ||||||||||||    
T  30435588 ctgagttgtctcccaaaacgcttggtttgcttacaaaatcttagacatatagtcattgaag 30435528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 30677525 - 30677592
Alignment:
Q  399 cttgtcttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttc 466  Q
    |||| |||| |||||||||||||||||| ||||||||||| ||||| | |  |||||||| |||||||    
T  30677525 cttggcttgtttacaaaatcttagacatatagtcattgaatattgtgaatctttgtctcgtatgtttc 30677592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 466
Target Start/End: Complemental strand, 30206348 - 30206204
Alignment:
Q  322 gactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatctta 421  Q
    ||||||||||| | |||||||||  || ||||||||||| | ||||||| |   || || || ||||||||| ||  |||| |||| ||||| ||||| |    
T  30206348 gactcaatttacaacttacaaaaactggaaatcttgaaaataaaagattgtcaaaaacttagctgtcttccgaaaggcttggcttgtttacagaatctca 30206249  T
Q  422 gacatttagtcattgaagattgtcatttgttgtctcgcatgtttc 466  Q
    ||||| | |||||| ||||||| ||||  |||| || ||||||||    
T  30206248 gacatcttgtcattaaagattgccattcattgtttcacatgtttc 30206204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 438
Target Start/End: Complemental strand, 13616723 - 13616315
Alignment:
Q  22 ggggggcaagaatgtatggttttagataatgcatatgtgactaacttgtcaaaaagcacacatcatattagtttcaactatccgcgtccgatattatggg 121  Q
    |||||||||||||||||||||||||| |||||||  ||| ||||||| |||||||||||||||||||||||||||  |  |  ||||||  ||||||  |    
T  13616723 ggggggcaagaatgtatggttttagagaatgcatccgtgcctaacttatcaaaaagcacacatcatattagtttcgcccctaagcgtccagtattattag 13616624  T
Q  122 aagaggattccttcacaaatgcagaatcattgcgaacattgtataacccatattattttcgatttcgctttggaagtttcataccaataaagcacactct 221  Q
    |||| |||||||||| ||| ||| |||| |||||||||||||||   | | ||      ||  |||  ||  ||||| | | ||||| ||||||||| ||    
T  13616623 aagaagattccttcataaaagcaaaatctttgcgaacattgtatcgactaaat------cg--ttcttttgagaagtatgacaccaagaaagcacaccct 13616532  T
Q  222 tcgggttttgcgaacagacacttttgaattctcattactcggtagtctaattcatctgaggtatttagagcttcacaattttgacatagaaaccttcccc 321  Q
    || | ||||  ||| | ||||| | || || |||||||||||| ||  ||||||| ||| |||||| |||||||||| |||||| ||| ||||||||||     
T  13616531 tcagtttttaagaaaaaacactatagagttatcattactcggtggttaaattcatttgatgtatttggagcttcacagttttgagataaaaaccttccct 13616432  T
Q  322 gactcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatctta 421  Q
    ||||||||||||||| |||||||  || |||||||||| |||||||  ||| |||  |||||||  |||||| ||| |||||||||||||||| ||||||    
T  13616431 gactcaatttatagcatacaaaaaatggaaatcttgaagttgaaagcctttcccagactgagtttccttccgaaacgcttgtcttgcttacaacatctta 13616332  T
Q  422 gacatttagtcattgaa 438  Q
    || ||| ||||||||||    
T  13616331 gatattaagtcattgaa 13616315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 20296928 - 20296993
Alignment:
Q  379 ctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcattgaagattgt 444  Q
    ||||||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  20296928 ctgagttgtcttccgaaacacttggcctgcctacaaaatcttagacatatagtcattgaagattgt 20296993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 439
Target Start/End: Complemental strand, 26707166 - 26707050
Alignment:
Q  323 actcaatttatagcttacaaaagttgaaaatcttgaaattgaaagatttttccaacctgagttgtcttccggaacacttgtcttgcttacaaaatcttag 422  Q
    |||||||||| | |||| ||||  || ||||||||||| | ||||||| |   || ||||||||||||||  |||||||| |||| ||||||||||||||    
T  26707166 actcaatttacaacttaaaaaaactggaaatcttgaaaataaaagattgtgataatctgagttgtcttcctaaacacttgacttgtttacaaaatcttag 26707067  T
Q  423 acatttagtcattgaag 439  Q
    |||| ||||||||||||    
T  26707066 acatatagtcattgaag 26707050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 25294206 - 25294262
Alignment:
Q  379 ctgagttgtcttccggaacacttgtcttgcttacaaaatcttagacatttagtcatt 435  Q
    |||||| |||||||  |||| ||| ||||||||||||||||||||||| || |||||    
T  25294206 ctgagtggtcttccaaaacatttggcttgcttacaaaatcttagacatctaatcatt 25294262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University