View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_29 (Length: 468)
Name: NF3002_low_29
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_29 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0374 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 254 - 468
Target Start/End: Complemental strand, 45191351 - 45191137
Alignment:
| Q |
254 |
atatgagatgaatcttcacctgtttgataatgtaaattgtcacaattacctgtatggagataatgcaaaccacgagcagcgccaatgcatatttcaagcc |
353 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45191351 |
atatgagatgaatcttcatctgtttgataatgtaaattgtaacaattacctgtatggagataatgcaaaccacgagcagcgccaatgcatatttcaagcc |
45191252 |
T |
|
| Q |
354 |
tcttttgccatgacaaaggagaaaagttggagttataaaggtgcgagcgaaaagggccattagacatgtaatcgtatacaagaaccatctctgagttttc |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45191251 |
tcttttgccatgacaaaggagaaaagttggagttataaaggtgcgagcgaaaagggccattagacatgtaatcgtatacaagaaccatctctgagttttc |
45191152 |
T |
|
| Q |
454 |
atcacagaaacctat |
468 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45191151 |
atcacagaaacctat |
45191137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 45191542 - 45191346
Alignment:
| Q |
10 |
ataattctcatccaagagtatattggttgtcttcacgtcacggtgtatgatactttgagatgcacctatattagatatataaatttagttagagtccatt |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45191542 |
ataattctcatccaagagtatatttgttgtcttcacgtcacggtgtatgatactttgagatgcacctatattagatatataaatttagttagagtccatt |
45191443 |
T |
|
| Q |
110 |
cgtaggcaattagtttgttaattatctactcactctactcgctccatatatagagcatctcatgtattcatcaacaatcttttatcaatcaatatga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45191442 |
cgtaggcaattagtttgttaattatctactctctctactcactccatatatagagcatctcatgtattcatcaacaatcttttatcaatcaatatga |
45191346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 14234 - 14176
Alignment:
| Q |
158 |
tatagagcatctcatgtattcatcaacaatcttttatcaatcaatatgaaatctaaaga |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||||||||||| || ||||| |
|
|
| T |
14234 |
tatagagcatctcatgtattcatctgcaacatttaatcaatcaatatgaattcaaaaga |
14176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University