View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_34 (Length: 442)
Name: NF3002_low_34
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_34 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 2817 - 3246
Alignment:
| Q |
1 |
tatggacgtattataaactgtttccataagttttttcatatactctcagagttgcttatccattagatacactcaaataaatcaatccaaatagatactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2817 |
tatggacgtattataaactgtttccataagttttttcatatactctcagagttgcttatccattagataaactcaaataaatcaatccaaatagatactt |
2916 |
T |
|
| Q |
101 |
agtgtttggtgtgtatttctgatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattt |
200 |
Q |
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| T |
2917 |
aatgtttggtgtgtatttctgatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattt |
3016 |
T |
|
| Q |
201 |
taattgggtttgcatcagggatgtgatgcttctattttgttggataatgatgaatacattgattcagaaaaagattcacctcccaatgatagcctcaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
3017 |
taattgggtttgcatcagggatgtgatgcttctattttgttggataatgatgaatacattgattcagagaaagattcacct-ccaatgatagcctcaaag |
3115 |
T |
|
| Q |
301 |
gatttgatgtaatcgagaccattaaagccaagcttgaagaagcatgtcctggagttatttcttgtgctgatattcttgtacttgctgcaagagattctgt |
400 |
Q |
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| T |
3116 |
gatttgatgtaatcgagaccattaaagccaagcttgaagaagcatgtcctggagttgtttcttgtgctgatattcttgtacttgctgcaagagattctgt |
3215 |
T |
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| Q |
401 |
tgttttggtaacattatttatttccctatat |
431 |
Q |
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| T |
3216 |
tgttctggtaacattatttatttccctatat |
3246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 3452036 - 3452360
Alignment:
| Q |
1 |
tatggacgtattataaactgtttccataagttttttcatatactctcagagttgcttatccattagatacactcaaataaatcaatccaaatagatactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3452036 |
tatggacgtattataaactgtttccataagttttttcatatactctcagagttgcttatccattagataaactcaaataaatcaatccaaatagatactt |
3452135 |
T |
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| Q |
101 |
agtgtttggtgtgtatttctgatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattt |
200 |
Q |
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| T |
3452136 |
aatgtttggtgtgtatttctgatgtttaccttttctctatggtatagttgagtcagcacaattagacctcatttatgttttgaaactaaactattgattt |
3452235 |
T |
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| Q |
201 |
taattgggtttgcatcagggatgtgatgcttctattttgttggataatgatgaatacattgattcagaaaaagattcacctcccaatgatagcctcaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
3452236 |
taattgggtttgcatcagggatgtgatgcttctattttgttggataatgatgaatacattgattcagagaaagattcacct-ccaatgatagcctcaaag |
3452334 |
T |
|
| Q |
301 |
gatttgatgtaatcgagaccattaaa |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3452335 |
gatttgatgtaatcgagaccattaaa |
3452360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 55186094 - 55186045
Alignment:
| Q |
345 |
tgtcctggagttatttcttgtgctgatattcttgtacttgctgcaagaga |
394 |
Q |
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|||||||||||| |||| ||| ||||||||||||| ||| |||||||||| |
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| T |
55186094 |
tgtcctggagttgtttcctgttctgatattcttgttctttctgcaagaga |
55186045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 32309760 - 32309829
Alignment:
| Q |
340 |
aagcatgtcctggagttatttcttgtgctgatattcttgtacttgctgcaagagattctgttgttttggt |
409 |
Q |
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| T |
32309760 |
aagcatgtcccggcgttgtgtcttgtgctgatatacttgctcttgccgcaagagattccgttcttttggt |
32309829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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