View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_36 (Length: 432)
Name: NF3002_low_36
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 188 - 413
Target Start/End: Original strand, 31377868 - 31378091
Alignment:
| Q |
188 |
gttactcgtcctgtgcccatgcctgattgtatcctctgatacctgtgtgtacgagttttttctcatccctagaccaagctcacctaaacattttaatttc |
287 |
Q |
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| T |
31377868 |
gttactcgttccgtgcccatgcctgattgtatccttcgatacctgtgtgtacgagatttttgtcatctctagaccaaactcacctaaacattttattttc |
31377967 |
T |
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| Q |
288 |
aaacaataaaacaaattaaaaggaggaaaatgacatcggaaagttcaggagaagaatcagaaaaagcatatatattgcaagtcaagctttgaactattgt |
387 |
Q |
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| T |
31377968 |
aaacaacaatacatattaaaaggaggaaaatgacatcggaaagatcaggagaagaatcagaaaaagc--ttatagtacaagtcaagctttaaattattgt |
31378065 |
T |
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| Q |
388 |
tcacatgtacaattgatgtgatgtcc |
413 |
Q |
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| T |
31378066 |
gcacgtttactatagatgtaatgtcc |
31378091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 31377301 - 31377455
Alignment:
| Q |
1 |
ttttgactacacaagagagtattaactcataaaattgttgatacaatgcattctcactatgactacaaaattactaatcaaacaacaaatcaaaattagg |
100 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
31377301 |
ttttgactacacaagaaagtattaacacagaaaattgttgatacaatgcagtctcactttgactacataattactaatcaaacaataaatcaaaattagg |
31377400 |
T |
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| Q |
101 |
aaatta---tggcatttctttcacgtggggaagagtttgctgtttaagtaataag |
152 |
Q |
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| T |
31377401 |
aaattaggttagcatttctttcacatggggaagagtttgctgtttaagtaataag |
31377455 |
T |
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