View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_37 (Length: 419)
Name: NF3002_low_37
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_37 |
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| [»] scaffold0432 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 9826530 - 9826938
Alignment:
| Q |
1 |
tcttgttcaatttagagaaattaatgtatgggttgaatgattatctcctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaaga |
100 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
9826530 |
tcttgttcaatttagagaaattaatttatgggttgaatgattatctcctttatcacaaagtataccatgaataagtgaaattaacatgcaatcttaaaga |
9826629 |
T |
|
| Q |
101 |
ataacatttgtcataacttttttaattaagagctagctaagtccattagttttaaattaatatcctaagtctctggttgttgaattttttggtttagctc |
200 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9826630 |
ataacaatcgtcataacttttttaattaagagctagctaagtccattagttttaaattaatatcctaagtttctggttgttgaattttttggtttagctc |
9826729 |
T |
|
| Q |
201 |
atccactttggccattgcacaccttcatcatatggtactattagttttacaaaactagtcctcaactattagttttaaataataaaaatgaacggttttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9826730 |
atccactttggccattgcacaccttcatcatatggtactattagttttacaaaactagtcctcaactattagttttaaataataaaaatgaacggttttt |
9826829 |
T |
|
| Q |
301 |
cttttcaaataaaaatatgtgttaatttacaccgttgtgtttttaagtgggtgtacattagcact-----catcacaaacatatagcacaaaaaggaagg |
395 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
9826830 |
cttttcaaataaaaatatgcgttaatttacaccgttgtgtttttaagtgggtgtacattagcactcatcacatcacaaacatatagcacaaaagcgaagg |
9826929 |
T |
|
| Q |
396 |
catatctct |
404 |
Q |
| |
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||||||||| |
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| T |
9826930 |
catatctct |
9826938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 9751512 - 9751751
Alignment:
| Q |
3 |
ttgttcaatttagagaaattaatgtatgggttgaatgattatctc--ctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaaga |
100 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||| |||||| |
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| T |
9751512 |
ttgttcaatttagagaagttaatttatgggttgaatgattatctctcctttatcacaaagtataccatgaataagtgaaattaacattcaatcttaaaga |
9751611 |
T |
|
| Q |
101 |
ataacatttgtcataacttttttaattaagagctagctaagtccattagttttaaattaatatcctaagtctctggttgttgaattttttggtttagctc |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |||| |||||| |||||||||||| | || |
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| T |
9751612 |
ataacaattgtcataacttttttaattaagagctagccaagtccattagttttaaattaatatgccaagtttctgattgttggattttttggttttgttc |
9751711 |
T |
|
| Q |
201 |
atccactttggccattgcacaccttcatcatatggtacta |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9751712 |
atccactttggccattgcacaccttcatcatatggtacta |
9751751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 9812149 - 9812295
Alignment:
| Q |
16 |
agaaattaatgtatgggttgaatgattatctcctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaagaataacatttgtcata |
115 |
Q |
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|
|||||||||| ||||| ||||||||||||||| | ||||||| |||| ||||| ||||| ||||||||||||||||| || ||||||||| |||||||| |
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|
| T |
9812149 |
agaaattaatttatgg-ttgaatgattatctctt-tatcacacagtaaaccatgaataaatgaaattaacatgcaatattatagaataacaattgtcata |
9812246 |
T |
|
| Q |
116 |
acttttttaattaagagctagctaagtccattagttttaaattaatatc |
164 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
9812247 |
acttttttaattaagagctaactaagtccattagtttaaaattaatatc |
9812295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 9751913 - 9751991
Alignment:
| Q |
321 |
gttaatttacaccgttgtgtttttaagtgggtgtacattagcactcatcacaaacatatagcacaaaaaggaaggcata |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9751913 |
gttaatttacaccgttatgtttttaagtaggtgtacattagcactcatcacaaacatatagcacaaaagcgaaggcata |
9751991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 9751790 - 9751835
Alignment:
| Q |
241 |
ttagttttacaaaactagtcctcaactattagttttaaataataaa |
286 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9751790 |
ttagttttacaaaactaaccctcaactattagttttaaataataaa |
9751835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 9812415 - 9812474
Alignment:
| Q |
241 |
ttagttttacaaaactagtcctcaactattagttttaaataataaaaatgaacggttttt |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||| || || ||||||| |
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|
| T |
9812415 |
ttagttttacaaaactagaactcaactattagttttaaacaataaacataaatggttttt |
9812474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 5907 - 6127
Alignment:
| Q |
12 |
ttagagaaattaatgtatgggttgaatgattatctcctctatcacaaagtataccatcaataagtgaaattaacatgcaatcgtaaagaataacatttgt |
111 |
Q |
| |
|
||||||| |||||| ||||| | || |||||||||||| ||||| | |||| ||||| ||||| |||| ||||||||||||| || ||||||||| |||| |
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| T |
5907 |
ttagagagattaatttatggttcga-tgattatctcctttatcatacagtacaccatgaataaatgaagttaacatgcaatcttatagaataacaattgt |
6005 |
T |
|
| Q |
112 |
cataacttttttaattaagagctagctaagtccattagttttaaattaatatcctaagtctctggttgttgaattttttggtttagctcatccactttgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||||||||| ||||||| || |
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| T |
6006 |
cataacttttttaattaagagctagctaagtccattagttttaaattaatatcttacgtttctgattgtttaattttttggtttagctcgtccacttcgg |
6105 |
T |
|
| Q |
212 |
ccattgcacaccttcatcatat |
233 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
6106 |
acattgcacaccttcatcatat |
6127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 6242 - 6330
Alignment:
| Q |
296 |
tttttcttttcaaataaaaatatgtgttaatttacaccgttgtgtttttaagtgggtgtacattagcactcatcacaaacatatagcac |
384 |
Q |
| |
|
||||| ||||||||| ||| || | ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6242 |
ttttttttttcaaattaaattacgcgttaatttacaccattatgtttttaagtgggtgtacattagcactcatcacaaacatatagcac |
6330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 6174 - 6219
Alignment:
| Q |
241 |
ttagttttacaaaactagtcctcaactattagttttaaataataaa |
286 |
Q |
| |
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|||||||||||||||| | |||||||||||| |||||||||||||| |
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|
| T |
6174 |
ttagttttacaaaactcgccctcaactattacttttaaataataaa |
6219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 388
Target Start/End: Original strand, 6325 - 6354
Alignment:
| Q |
359 |
tagcactcatcacaaacatatagcacaaaa |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6325 |
tagcactcatcacaaacatatagcacaaaa |
6354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 29365562 - 29365514
Alignment:
| Q |
267 |
tattagttttaaataataaaaatgaacggtttttcttttcaaataaaaa |
315 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| | |||||||||||| |
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|
| T |
29365562 |
tattaattttaaataataaagatgaacggtttttttgttcaaataaaaa |
29365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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