View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_low_39 (Length: 416)

Name: NF3002_low_39
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_low_39
NF3002_low_39
[»] chr8 (1 HSPs)
chr8 (19-395)||(30054927-30055290)
[»] chr3 (10 HSPs)
chr3 (300-395)||(8400489-8400584)
chr3 (281-396)||(5367622-5367737)
chr3 (281-391)||(5362411-5362521)
chr3 (287-391)||(5374181-5374285)
chr3 (48-103)||(8400207-8400262)
chr3 (281-391)||(5355979-5356089)
chr3 (49-103)||(5368748-5368802)
chr3 (49-103)||(5374505-5374559)
chr3 (48-94)||(5367951-5367997)
chr3 (48-94)||(5362735-5362781)
[»] chr7 (1 HSPs)
chr7 (56-100)||(30597955-30597999)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 30054927 - 30055290
Alignment:
Q  19 tatactttgttaaatactccaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaattcgtaatacctgga 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         |||     
T  30054927 tatactttgttaaatactacaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagt---------tggt 30055017  T
Q  119 cactatgtgaaacagcgtattctacgatactattcagtattcggggttccacggaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatc 218  Q
     | | ||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30055018 gaatttg----acagcgtattctacgatactattcagtattcggggttccacgaaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatc 30055113  T
Q  219 atcgcgaagagacaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgaga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055114 atcgcgaagagacaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgaga 30055213  T
Q  319 tagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055214 tagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat 30055290  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 8400489 - 8400584
Alignment:
Q  300 tggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat 395  Q
    ||||||||| |||||||||| | ||||||||||||||||||  |||||||||||| ||||||| || |||||||| |||||||||| |||||||||    
T  8400489 tggaagatgttttgtgagatggatccatcttgttgagagtacacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataat 8400584  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 396
Target Start/End: Complemental strand, 5367737 - 5367622
Alignment:
Q  281 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag 380  Q
    ||||| |||||||||||||||| ||||| |||| |||||  |||||||| || ||||||||| ||||||||||||||| ||| ||||  || || |||||    
T  5367737 tggaacttaatctaagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag 5367638  T
Q  381 aatgtcatggataatc 396  Q
    ||||| ||||| ||||    
T  5367637 aatgtgatggagaatc 5367622  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 5362521 - 5362411
Alignment:
Q  281 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag 380  Q
    ||||| |||||||||| ||||||| ||| ||||  ||||  ||||||| | | ||||||||||||||||||||||||||||| |||| ||| || |||||    
T  5362521 tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagag 5362422  T
Q  381 aatgtcatgga 391  Q
    ||||| |||||    
T  5362421 aatgtgatgga 5362411  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 5374285 - 5374181
Alignment:
Q  287 ttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtc 386  Q
    |||||||||||||||||| ||| |||| |||||  |||||||| || ||||||||| ||||||||||||||| ||| ||||  || || ||||||||||     
T  5374285 ttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtg 5374186  T
Q  387 atgga 391  Q
    |||||    
T  5374185 atgga 5374181  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 8400207 - 8400262
Alignment:
Q  48 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 103  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  8400207 gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaa 8400262  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 5356089 - 5355979
Alignment:
Q  281 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag 380  Q
    ||||| |||||||||||||||  ||||| |||| |||||  |||||||| || ||||||||| ||||||||||||||| ||| ||||  || || |||||    
T  5356089 tggaacttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag 5355990  T
Q  381 aatgtcatgga 391  Q
    ||||| |||||    
T  5355989 aatgtgatgga 5355979  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 5368802 - 5368748
Alignment:
Q  49 tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 103  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5368802 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaa 5368748  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 5374559 - 5374505
Alignment:
Q  49 tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 103  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5374559 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaa 5374505  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 5367997 - 5367951
Alignment:
Q  48 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc 94  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  5367997 gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagc 5367951  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 5362781 - 5362735
Alignment:
Q  48 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc 94  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||    
T  5362781 gtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagc 5362735  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 30597955 - 30597999
Alignment:
Q  56 aaaggtcaagagaagttaaagtttgagatgaaaataagcaagatg 100  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  30597955 aaaggtcaagagaggttaaagtgtgacatgaaaaaaagcaagatg 30597999  T

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