View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_4 (Length: 793)
Name: NF3002_low_4
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 517 - 793
Target Start/End: Complemental strand, 2787519 - 2787240
Alignment:
| Q |
517 |
gtctaacgctagtttggcctatgcacattttgtcggggactgaaatgagccttcactcttttaannnnnnnnnatatatacattaaaatcgtgtgttaag |
616 |
Q |
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| T |
2787519 |
gtctaacgctagtttggcctatgcacattttgtcggagaccaaaatgagccttcactcttttaaaaatcttt--tatatacattaaaatcgtgtgttaag |
2787422 |
T |
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| Q |
617 |
aatcttaattgtnnnnnnnntcattttaacaaattctcttaaaatctctcac-gagtcaataaaaacccacaaattttttaaacaatatcg----ttata |
711 |
Q |
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| T |
2787421 |
aatcttaattgtaaaaaaaatcattttaacaaattctcttaaaatctctcactgagtcaataaaaacccacaaattttttaaacaatatcgctatatata |
2787322 |
T |
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| Q |
712 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatga |
793 |
Q |
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| T |
2787321 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatga |
2787240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 2787992 - 2787655
Alignment:
| Q |
18 |
aacaggcgcatggtgagggataaagacctggaagtgatgaataatcaagtgttagggcacaatctggtatagtcccaaaaatatgattaatcttatattt |
117 |
Q |
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| T |
2787992 |
aacatgcgcatggtgagggataaagacctggaagtgatgaataatcaagtgttatggcacaatctgatttaagcc-----------------ttatattt |
2787910 |
T |
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| Q |
118 |
cggttttcttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtgtcagtgatgacgatggttgtttcgaccaaagaagtaga |
217 |
Q |
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| T |
2787909 |
cggttttcttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtttcaatgatgacgatggttgttttgaccaaagaagtaga |
2787810 |
T |
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| Q |
218 |
ccgacnnnnnnngaatcaatttagtttcataaaatttaacaaattgcatttttatcatggag-nnnnnnnnntgactaatttcagttttaattaaatttt |
316 |
Q |
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| T |
2787809 |
ccgacaaaaaaagaatcaatttagtttcataaaatttaacaaattgcatttttgtcatggagaaaaaaaaaatgactaatttcagttttaattaaatttt |
2787710 |
T |
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| Q |
317 |
tatagggaccaaatcatcccnnnnnnnntttgtagagacttaactgtcccttatc |
371 |
Q |
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| T |
2787709 |
tatagggaccaaatcatcccaaaaaaattttgtagagacttaactgtcccttatc |
2787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 2787626 - 2787537
Alignment:
| Q |
378 |
aagacgactgtattgtcatatattcccagacaaggttcaaaaataggaagaaaattgttggttgaagacaaaaattgacggaatgactaa |
467 |
Q |
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| T |
2787626 |
aagacgactgtattgtcatatattcccagtcacggttcaaaaataggaagaaaattgttggttgaagacgaaaattgacggaatgactaa |
2787537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22363734 - 22363679
Alignment:
| Q |
1 |
atgtgcaaataacataaaacaggcgcatggtgagggataaagacctggaagtgatg |
56 |
Q |
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| T |
22363734 |
atgtgcaaataacataaaacgggcgcatggtgagggataaagacctggaagtgatg |
22363679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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