View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_41 (Length: 415)
Name: NF3002_low_41
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 44260838 - 44260430
Alignment:
| Q |
1 |
caatttctctagacatagtcagaacaaaatacaaacaagaagctagtttcaaaccatcaaaacttgcaccaccctcttctttttgagattaaaaagaaag |
100 |
Q |
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| T |
44260838 |
caatttctctagacatagtcagaacaaaatacaaacaagaagctagtttcaaaccatcaaaacttgcaccaccctcttctttttgagattaaaaagaaag |
44260739 |
T |
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| Q |
101 |
atctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatccagttgatttatcaagtcattaagatcaacatgttgactaagttgg |
200 |
Q |
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| T |
44260738 |
atctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatctagttgatt---ccagtcattaagattaacatgttgactaagttgg |
44260642 |
T |
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| Q |
201 |
tttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctcacttgtataaccaggattaactacttggtcattcatctccacaagcc |
300 |
Q |
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| T |
44260641 |
tttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccacaatctcacttgtataatcaggattaactacttggtcattcatctccacaagcc |
44260542 |
T |
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| Q |
301 |
cattaagttggtttaatggtgaactaggaggaaaatcaccaagatcagaaaaatcaatcatctcacatatatccaaggtgttagtttcaatttgttgcat |
400 |
Q |
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| T |
44260541 |
cattaagttggtttaatggtgaactaggaggaaaatcaccaagatcagaaaaatcaatcatctcacatatatccaaggtgttagtttcaatttgttgcat |
44260442 |
T |
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| Q |
401 |
attcttcgacat |
412 |
Q |
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| T |
44260441 |
atttttcaacat |
44260430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 256
Target Start/End: Complemental strand, 15978473 - 15978278
Alignment:
| Q |
61 |
aacttgcaccaccctcttctttttgagattaaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatccagttg |
160 |
Q |
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| T |
15978473 |
aacttgcatcgcccttttcactttgagatgaaaaagaaagatctttccagaaaaactgatgaggctgactaacctgattcaaaacaccaccatctagttg |
15978374 |
T |
|
| Q |
161 |
atttatcaagtcattaagatcaacatgttgactaagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctcact |
256 |
Q |
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| T |
15978373 |
atttaaccaatcgtcagaatcatcaagttgactaagttgctttgtagatgaactaggatgcaaatcaccaagattagtgaaatcaatcatctcact |
15978278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 15978617 - 15978546
Alignment:
| Q |
82 |
tttgagattaaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcat |
153 |
Q |
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| T |
15978617 |
tttgagatgaaaaagaaagatctttccatgcaaactgatcaggttgattagcccagttcaaaacaccatcat |
15978546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 15978268 - 15978208
Alignment:
| Q |
194 |
aagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctca |
254 |
Q |
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| T |
15978268 |
aagttggtttgttgatgaattatgaggcaaatcaacatgattagtcaaatccaccatctca |
15978208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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