View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_low_43 (Length: 413)
Name: NF3002_low_43
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 8349513 - 8349135
Alignment:
| Q |
1 |
agtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
8349513 |
agtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagcattcaataag |
8349414 |
T |
|
| Q |
101 |
ctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagagcgtgtcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8349413 |
ctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagagcgtgtcaca |
8349314 |
T |
|
| Q |
201 |
accattgatgcacattgtaccgaatcagcaacttaccgtccatgatttgctgccgaatggatnnnnnnntggaatttagatgtgcttcagcagttcagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
8349313 |
accattgatgcacattgtaccgaatcagcaatttaccgtccatgatttgctgccgaatggataaaaaagtggaaattagatgtgcttcagcagttcagct |
8349214 |
T |
|
| Q |
301 |
gtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8349213 |
gtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
8349135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 11993792 - 11994025
Alignment:
| Q |
27 |
taaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaa |
126 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| || |||||| |||||| ||| |||||||||||| ||||| || |||||| |||| |||| | |
|
|
| T |
11993792 |
taaatcacttgaactaatgtttttggaagatagtttttttaaacttctcttacaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtaca |
11993890 |
T |
|
| Q |
127 |
aaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggtt-agcaaacaagagcgtgtcacaaccattgatgcacattgtaccgaat |
225 |
Q |
| |
|
| |||||||||||||||||| ||||| ||||||| ||| |||||| |||||| ||||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
11993891 |
agatggaaggttggtagtggagagaatatccgggtgttttatgacaattggtttagcaaacaagagcatggaacaaccattgatgcacattgtactgaat |
11993990 |
T |
|
| Q |
226 |
cagcaacttaccgtccatgatttgctgccgaatgg |
260 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||| |
|
|
| T |
11993991 |
cagcaacttaaagtccgagatttgctgcagaatgg |
11994025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University