View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_low_48 (Length: 400)
Name: NF3002_low_48
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 162 - 383
Target Start/End: Original strand, 13480523 - 13480731
Alignment:
| Q |
162 |
tccatatccatatatacacaattatgtctatacacaacacacacatgcagctttctttattccattagatctgaaaaagactacttacccaacttcacat |
261 |
Q |
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| T |
13480523 |
tccatatccatatatacacaattatgtctatacacaacacacacatgcagctttctttattccattagatctgaaaaagactacttacccaacttcacat |
13480622 |
T |
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| Q |
262 |
aaatccttttacaaaaacttctcattcactcaccctttttcattacaatcacatgtacaacaaaactcaacaacaaaaccttccatttctcttcatcatc |
361 |
Q |
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| T |
13480623 |
aaatccttttacaaaaacttctcattcactcaccctctttcattacaatcacatgt-------------acaacaaaaccttccatttctcttcatcatc |
13480709 |
T |
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| Q |
362 |
tccatccatgcatgaaaccatt |
383 |
Q |
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| T |
13480710 |
tccatccatgcatgaaaccatt |
13480731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 13480368 - 13480493
Alignment:
| Q |
7 |
ctaaatggttatttagtctttaatcttgattttgtgtctaatactagatagtattgttgtagtggtggatcacttcattcatgctgacacaactgttttg |
106 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13480368 |
ctaaatggttatttagtctttaatcttaattttgtgtctaatactagctagtattgttgtagtggtggatcacttcattcatgctgacacaactgttttg |
13480467 |
T |
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| Q |
107 |
gatcatctagtgacatctatgcccca |
132 |
Q |
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| T |
13480468 |
gatcatctagtgacatctatgcccca |
13480493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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